Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2349 ATGGATCCCTCCTCCCTCTTGTATTTTTTTTTAAAAAAAGAAAAGAAGAAAAATGGTGTAAGAGAGAAGAAGAAAGGAGAAGAAAAACAAATTACCCGGCGGCCGGCCGGCGACGGCGAGCGGTGGCCGACAGCTGGCGCCGACCGCCGGAGATTTGAAGAAGAAGATGGAGGGGAAAATTTCAATTCTAGGGTTTCTCTGGTTCAAGTTCTTCACACTTTCACCAAATCTTCTTCCGGAGATCTTGTGTTCCAAGCAGCAATGACTGATGAATTGCTTTTTACTCAGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATACGGTGCCAGTCTGAGAAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTTGAAGAGGAAGGCAGTCGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCCGGCGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATCAGGAGGCTGAGAGAACAGACTGAAAGTTAA 540 45.93 MDPSSLLYFFLKKEKKKNGVREKKKGEEKQITRRPAGDGERWPTAGADRRRFEEEDGGENFNSRVSLVQVLHTFTKSSSGDLVFQAAMTDELLFTQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFLKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39542678 39546651 - Lag0032987.1 Lac11g2349 588207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2349 179 MobiDBLite consensus disorder prediction 17 56 - -
Lac11g2349 179 SUPERFAMILY Zn-binding ribosomal proteins 105 169 IPR011332 GO:0006412(InterPro)
Lac11g2349 179 PANTHER ZGC:171772 92 178 - -
Lac11g2349 179 MobiDBLite consensus disorder prediction 17 36 - -
Lac11g2349 179 Gene3D - 96 179 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac11g2349 179 Pfam Ribosomal L37ae protein family 99 175 IPR002674 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2349 K02921 - - cit:102621114 159.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2349 Lac-Chr11:39542678 Lac8g0697 Lac-Chr8:12570433 9.70E-07 dispersed
Lac11g2349 Lac-Chr11:39542678 Lac12g1997 Lac-Chr12:36848015 1.60E-38 wgd
Lac11g2349 Lac-Chr11:39542678 Lac7g0423 Lac-Chr7:3286111 1.60E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g572 . . . . . . . Bma14g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00034 . . . . . . Bpe11g00293 . . . . Cmo19g00396 . . . . . . Bhi05g00568 Tan07g1907 . Lac11g2349 Hepe06g1723 . Lcy12g1883 Cla09g01201 Cam09g1269 Cec09g1283 . . . Cre09g1229 . . . Cme04g00043
Vvi15g278 . . Bda03g01146 . . Bpe05g01155 Bma04g01157 Bma05g01308 . Cmo17g00079 Cma06g01191 Cma14g01921 Car06g01045 Car14g01721 Sed02g1536 Cpe08g00422 Cpe03g01621 Bhi01g00176 Tan10g0471 Cmetu04g2835 Lac11g2349 . . Lcy11g1810 Cla05g00314 . Cec05g0346 . Clacu05g0341 Cmu05g0326 . . . . . Lsi05g01876 . . Cme06g00352 . . . . . . . . . Cmo06g01229 Cmo14g01976 . Cma17g00074 . Car17g00068 . . . . . . . . . . . . . . . . . Csa03g01061 Chy06g00333 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001112 1 3 2 3 3 2 4 1 2 3 3 2 4 3 3 3 2 4 4 1 2 3 2 3 2 2 3 4 4 2 80