Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2350 ATGGTCGACTACAGTTTGCCGGTATCGAAGAGAACGAGGCTGAGACGAGCAATGGCTGGAGAGGAGAATCTGGAGCAGAGGAAGAAGCGGAGGAGGAAGAACAGGGCGGATTCCGCCAGTGATAATGTTCGGAGCGGAGGATTTGGTGATGGAGGTAAGAGGGTTAATGCTTCTGAAAATTGTAGTGTTAATCGTAGAATGGAAGTAGCGAAAGTGGTTTTAAGTGTTGACAGTGAGGAGGAGAGTGTGGAGGAGATTGATGCGGCTACGTTTGGTAGAGAAGGAGGGGATTCGGTCACATTTGTAGGTTCTGAGAGTTCGGGGTTGAAGAATGTGAATAGATTTAGTGCGAAGGGGGTTGAGAAGAGGAATGTCGATTCAATCGATTTAGATGATGAGGTGATTTTGATTGACGATGAGGAGGGTTTTGATTCTGTGAATTCTAACTGTTCAATATCTAAGTCGGCAACTGCTGCTGCTGCTGCAAAGGGTGGGGTTTCAGATTTGGATAATGAAAATGGTAGTAGTGGCTTGATTTCATCTGGCAAGGAAAAGACTGCTTTAGAGATATCTCCCAATAAAAGCATGGGGGAAAGTAATTGCTTGAACTCTAATGGTTGTGAGAGTGGTGGTTGCTCGTACAGGGCTGAGCCCACGAGTCGTTCTGATGAGGCTGTGGATGAGTCCATTGAATCGGGAGCATCATCAAGTGAAGAGGAGTATGATGACTCGAGTGATGAGAATTATGAATTAGAAGTATCAGAAGAGTCAAGTTCAGAGTCCTCTAGTTCAGAAAGTGGGAAGGATAATGCAAGCAAGGATGAACACACACCCAATTACAGAAATGAAAATGTTGAGGTTGGTGAACTCGTTAACTGTGTTGCACAAAGGACTCGCTCACGCTTTGGTTTGAGGGTTAGAAAGATGAATCCTATTCACGGAACTTATAGTCAGCCACTCTGTCTTGACGAGGAAGAGTCAGATTTTCCGCATGATGAGAAAGAATTAGATTCTTCGTCAAGGCAGAACAGTGGAGATTCTTGTGATACTGATAGTAGTAGTAGTGCTGATGATGAAATTTACAAGCCATGGGCCTGGAGTAGCAGTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGATATCTTACGGAAAGAAGAAAATGATGATACAAACAGGGTTGAGAGTTTTTATGAGGGGAGTAAACTTTGGTATAGTAAAAGTTTACCTGAAACTAGTAAACGTAACCAGGGTGAAGATTGTGAAGTTTTTCAGAAGGTTCACCCAAAGAATTGCCATGATTTTGAAGATACTATTAAAGCAAAAGGCCCCAGAGCGTGGAAAAGTCTTGATGTTTTCAATGTTCTTGTGGATTCCATAATTGCAGACAAAGAACTGCCTTTAGATGTGTTAGATCCTCCTACAAGTCAAGTCTCCCATTTATCTGAGATGCCTCTCCCTTTGAAGTTTAATTTTGGATATGAGGAACCATGTCTTCCAGAGAAGTCAGAGGAAGAAAAGGAATTAGACAAATTGTGGGCAGAGCTTGACTTTGGTCTCAGATCCAGCGAGATTGGTGTGGTGGATTCTAATACAGTTGAAAACGAAGATGTCTTTCCTTCAAAGCTTGAGCAAGTGGATCCTTGTCTTCACGGTGATCATCAACTCATACTTGATGAACAAATTGGACTTATATGTACGTGTTGTTCATATGTCAAGTTGGAGATCAAAGATATTGTACCTTCTTTTGATACAAATCCATATGGAAAGTCAAAGAAGAGGGAATCTGGCCCATTCGAGCATGTTAAATTTGATGACCTTCAACAGGATTTTGATTGTGACCCCCTTGACGGATCTGATTCACAATCTCATTTTGGACGCACAGTGTGGGATATCATTCCCGGTATAAGGGACAGCATGTACCCACATCAGCGTGAAGGCTTCGAATTTATTTGGAAAAATATAGCTGGAGGAATTTATCTTGACGAGTTGAGAGAAAGGAACAACTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTGACAATTGTTTTTCTTCAGACATACATGGAACTATATCCAACATGCCGGCCTATGATTATTGCGCCAAGCAGCATGCTCCTAACCTGGGAAGAGGAGTTTTTGAAGTGGAAGGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGAGTTCACTCTCAAGGAAGATTTTTCAGCTCTTAAGTTCTTGATGCAAGCTTCCCCATCCGGACAAACTGTGGACAACATACGGCTGGTAAAACTGCTTTCCTGGAAAAAGCAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAGAGACTTGCAGGAGTAAGGAAGAATTCTAAATGTGATAAAGTAAGAAATGTCCTATTGGAGCTTCCTGATCTTGTGGTCTTTGATGAAGGGCACATACCACGCAATGATGATAGTCTTATCTGGATGGCCTTGTCTAAAATCAAAACAGAAAGGCGCATCATCCTCTCTGGTACTCCGTTCCAGAATAATTTTACTGAGTTTTATAATACACTAAGGTTGGTGAGGCCAAATTTTGCCGACGAAAGTAATTCTGGAGGCATCGGATGCCTAGATAAGAAGCGTGGACGGCCGAAAAACATCTCAAGAGGAAAATGGGACCTTTTGATTAGTTCCATTGACAGAACTCCTCAAGATTTACCAGAAAGTGATGATTTGAAAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTATACAGGGGCAACATACTACGAGAGAAACTCCCGGGGTTGAGGAAATCTATAGTTATTTTACAGCCAGCAGAGCTGCAGAAGACTTTTCTTCAGAGCATTGCAAGAAAGAGTTCTTTTGAAGTGGAATATGCTGAGTCTTTGATTTCTTTACACCCTTCCCTGATACTGAAATGTGCTATAGAACATTTTGCTGTTGACAAGGATGATTTCGTTATCGACAAGGATATGTTAGAGAAGGTTAGATTCAATCCTGAACTGGGAGTGAAAATACAGCTTCTCCTGGAAATTATACGACTGAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAGTACATTGAACCATTGTCCTTTATAGAAGAGCATCTCAAGTCTCATTTTAATTGGACTGAAGGGACAGAGTGGTTTCATATGGCTGGAAAACATGATTTAAAGAAACGGCAAGCATTAATAAATTCCTTTAACGATCCAACAAGTGAAGTTAGGGTATTGCTTGCGTCAACAAGGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCTATATGCCGTGCATATAGACTTGGGCAGAAAAAAGTTGTATATGTCTATCATTTCATTACCGCTGGGACAAAGGAAGAGGATAAATATGGCCGACAAGTGCAAAAAGATCGGTTGTCTGAGTTAGTTTTCTCTCCTGAACAGAGCAGCAATCAAGTAAACGTATTTTCCACAGATCTGGATGACAGAATTTTGGAAGCAGTACTTCAGCATGAAAAGCTGAAAAATATGTTCCAAAAGATATACCAGTCAAAGGAGTCCAGCATGAATGAGAATTTTGGTGGCTTGGCAGACAAGGAGTGA 3675 41.44 MVDYSLPVSKRTRLRRAMAGEENLEQRKKRRRKNRADSASDNVRSGGFGDGGKRVNASENCSVNRRMEVAKVVLSVDSEEESVEEIDAATFGREGGDSVTFVGSESSGLKNVNRFSAKGVEKRNVDSIDLDDEVILIDDEEGFDSVNSNCSISKSATAAAAAKGGVSDLDNENGSSGLISSGKEKTALEISPNKSMGESNCLNSNGCESGGCSYRAEPTSRSDEAVDESIESGASSSEEEYDDSSDENYELEVSEESSSESSSSESGKDNASKDEHTPNYRNENVEVGELVNCVAQRTRSRFGLRVRKMNPIHGTYSQPLCLDEEESDFPHDEKELDSSSRQNSGDSCDTDSSSSADDEIYKPWAWSSSKKRTQFNNQSDDDILRKEENDDTNRVESFYEGSKLWYSKSLPETSKRNQGEDCEVFQKVHPKNCHDFEDTIKAKGPRAWKSLDVFNVLVDSIIADKELPLDVLDPPTSQVSHLSEMPLPLKFNFGYEEPCLPEKSEEEKELDKLWAELDFGLRSSEIGVVDSNTVENEDVFPSKLEQVDPCLHGDHQLILDEQIGLICTCCSYVKLEIKDIVPSFDTNPYGKSKKRESGPFEHVKFDDLQQDFDCDPLDGSDSQSHFGRTVWDIIPGIRDSMYPHQREGFEFIWKNIAGGIYLDELRERNNLNNGSGCIVSHAPGTGKTRLTIVFLQTYMELYPTCRPMIIAPSSMLLTWEEEFLKWKVGIPFHNLNKREFTLKEDFSALKFLMQASPSGQTVDNIRLVKLLSWKKQKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFYNTLRLVRPNFADESNSGGIGCLDKKRGRPKNISRGKWDLLISSIDRTPQDLPESDDLKEIRALINPFVHVYRGNILREKLPGLRKSIVILQPAELQKTFLQSIARKSSFEVEYAESLISLHPSLILKCAIEHFAVDKDDFVIDKDMLEKVRFNPELGVKIQLLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKSHFNWTEGTEWFHMAGKHDLKKRQALINSFNDPTSEVRVLLASTRACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHFITAGTKEEDKYGRQVQKDRLSELVFSPEQSSNQVNVFSTDLDDRILEAVLQHEKLKNMFQKIYQSKESSMNENFGGLADKE 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39549924 39554773 - Lag0032988.1 Lac11g2350 588208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2350 1224 Gene3D - 937 1218 IPR027417 -
Lac11g2350 1224 SMART helicmild6 1044 1133 IPR001650 -
Lac11g2350 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 868 IPR027417 -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 164 291 - -
Lac11g2350 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 668 865 IPR014001 -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 169 210 - -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 267 282 - -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 233 254 - -
Lac11g2350 1224 SMART ultradead3 637 883 IPR014001 -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 14 28 - -
Lac11g2350 1224 CDD SF2_C_SNF 1012 1144 IPR049730 -
Lac11g2350 1224 Gene3D - 620 873 IPR038718 -
Lac11g2350 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1017 1181 IPR001650 -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 326 359 - -
Lac11g2350 1224 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1210 IPR044567 GO:0080188(InterPro)
Lac11g2350 1224 Pfam SNF2-related domain 644 970 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Lac11g2350 1224 MobiDBLite consensus disorder prediction 326 340 - -
Lac11g2350 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1172 IPR027417 -
Lac11g2350 1224 Pfam Helicase conserved C-terminal domain 1015 1133 IPR001650 -
Lac11g2350 1224 MobiDBLite consensus disorder prediction 1 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2350 K10875 - - csv:105435045 1567.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2350 Lac-Chr11:39549924 Lac5g0774 Lac-Chr5:10257629 6.20E-129 dispersed
Lac11g2350 Lac-Chr11:39549924 Lac12g1088 Lac-Chr12:13570427 7.60E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22963 PF00176 SNF2_N 4.80E-19 CL0023 Lac TR