Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2378 ATGGAGATTGTGAAGATATTGGTGGTTGTAATATTTGGTGTGGTTTTGCATGGGCTTGAGAGTTTAGGTGATGATGGACCATTGGTTTTTGACTATTACAAAGAAACATGCCCCATTGTCGAAGATATCGTTCGACGACAAGTCGAGATTGCAGTGCTCAAAGATCCTCGAATGGCTGCCTCACTCCTTCGCTTGCATTTCCATGATTGTTTTGTTATGGGATGTGATGCATCAGTTCTTCTAGACAACAATGACGAGATGTTGAGTGAAAAGCAAGCAACTCCAAACTTAAACTCTCTTCGCGGTTTCAATGTTATCGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACATTGTTTCTTGTGCTGATATTTTGACCATTGCTGCTCGTGATGCTGTTGTACTTAGAGGGGGACCTGGATGGGAAGTGTTATTGGGAAGAAAAGACTCACTGAAAGCAAGCTTTGATGGAGCCAACAAATACATTCCTTCTCCCAATTCCTCTCTTGAAACCCTAATTGCCAATTTTCAAGAACAGGGCCTTGATGTTGGAGACTTGGTTGCTCTATCAGGAAGCCACACCATAGGGAAAGCAAGATGCTTGAGCTTCAGACAAAGAGCATACCAATTGGACTCAGAAGAAGAAGAACATGACAGATACAAGAGATACAACACATTCAGAAGAGTTTTAAGGTCAATTTGCCCTGAAACAGGCCAAGATCAGAGGATAGCACCCTTAGATTTTGGGACACCTGCAAGGTTTGACAACCACTATTTCCTCAACCTTGTTCAAGGCAAAGGGCTGTTGGGGTCTGACAATGTGCTCATAACCCAAGACCATGAAGGCCAAATTAGAAGACAAGTTTGGAGCTATGCCTCTGACCAAACCCTTTTCTTTGCTTCCTTTGTTAAGTCCATTGTCAAGATGGGGAACATCAATGTCCTCACTGCCCAACAAGGTGAAGTAAGAAGGAATTGTAGGTTCACCAATCACTAG 1002 42.51 MEIVKILVVVIFGVVLHGLESLGDDGPLVFDYYKETCPIVEDIVRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDNNDEMLSEKQATPNLNSLRGFNVIDEIKYILEEACPYIVSCADILTIAARDAVVLRGGPGWEVLLGRKDSLKASFDGANKYIPSPNSSLETLIANFQEQGLDVGDLVALSGSHTIGKARCLSFRQRAYQLDSEEEEHDRYKRYNTFRRVLRSICPETGQDQRIAPLDFGTPARFDNHYFLNLVQGKGLLGSDNVLITQDHEGQIRRQVWSYASDQTLFFASFVKSIVKMGNINVLTAQQGEVRRNCRFTNH 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39969472 39971382 + Lag0033016.1 Lac11g2378 588236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2378 333 ProSiteProfiles Plant heme peroxidase family profile. 27 332 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lac11g2378 333 Gene3D Peroxidase, domain 2 165 312 - -
Lac11g2378 333 FunFam Peroxidase 165 311 - -
Lac11g2378 333 CDD secretory_peroxidase 28 331 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac11g2378 333 Gene3D - 32 332 - -
Lac11g2378 333 FunFam Peroxidase 31 173 - -
Lac11g2378 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Lac11g2378 333 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 SUPERFAMILY Heme-dependent peroxidases 28 332 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 PANTHER PEROXIDASE 72-RELATED 10 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g2378 333 Pfam Peroxidase 44 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2378 Lac-Chr11:39969472 Lac1g2959 Lac-Chr1:50399663 2.30E-86 dispersed
Lac11g2378 Lac-Chr11:39969472 Lac5g2087 Lac-Chr5:39510460 5.00E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2378 K00430 - csv:116402797 555.058