Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2404 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACCTGATTTCAACCTTCACCACCAACATCATCATCAGCAGCAACAGCAACAGCAACATCCCGACTCTCAATCTCGTCATGACGACGAATCCCATCAACCGTTGGAATTCGTCGCCGCCCCCGCCACCGATATGGTGGCCTCTCGCCGCCCGCGCGGCCGTCCACCGGGTTCCAAAAACAAGCCGAAGCCCCCGGTTATCATAACCCGGGAGAGCGCCAATACCCTACGAGCCCACATCCTTGAGGTCGGCAACGGCTGCGATGTCTTCGATAGCATCGCCACCTACGCCCGCCGCCGACAGCGGGGGATCTGCATCTTGAGTGGCAGCGGAATGGTGACGAATGTCAACTTGCGGCAACCGACGGCTGCGGGCGCCGTGTTAACCCTACAAGGTAGGTTTGAGATACTATCGCTGACTGGATCCTTCCTGCCGCCGCCTGCTCCTCCCGGCGCCACCAGTTTGACGATATACTTGGCTGGAGCGCAAGGCCAAGTAGTCGGTGGCAACGTCGTGGGGGAGCTGGTGGCGGCGGGGCCAGTAACAGTCATCGCCGCATCGTTTACAAACGTAGCGTACGAGAGACTGCCACTGGAAGAACAAGAACAAGATCAAGAACAAGAACAAGATCAACTTCAGATGCAGCCACCACCGACGTCGCAGGGCGGCGGTAACAATAACCCATTTCCAGATCCATCTACTGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAATCAAATTCAGCTACCATTCTGA 807 55.64 MAGLDLGNRYIHQLQRPDFNLHHQHHHQQQQQQQHPDSQSRHDDESHQPLEFVAAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGAQGQVVGGNVVGELVAAGPVTVIAASFTNVAYERLPLEEQEQDQEQEQDQLQMQPPPTSQGGGNNNPFPDPSTGLPFFNLPLNMQNQIQLPF 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40314016 40314822 + Lag0033042.1 Lac11g2404 588262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2404 268 FunFam AT-hook motif nuclear-localized protein 91 218 - -
Lac11g2404 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Lac11g2404 268 MobiDBLite consensus disorder prediction 215 255 - -
Lac11g2404 268 MobiDBLite consensus disorder prediction 22 81 - -
Lac11g2404 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Lac11g2404 268 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
Lac11g2404 268 MobiDBLite consensus disorder prediction 223 255 - -
Lac11g2404 268 CDD DUF296 92 177 IPR005175 -
Lac11g2404 268 Gene3D - 91 226 - -
Lac11g2404 268 PIRSF ESCAROLA 8 266 IPR014476 GO:0003680(InterPro)
Lac11g2404 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 259 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2404 Lac-Chr11:40314016 Lac5g0267 Lac-Chr5:2603522 4.00E-81 dispersed
Lac11g2404 Lac-Chr11:40314016 Lac12g1943 Lac-Chr12:36229761 6.60E-76 wgd
Lac11g2404 Lac-Chr11:40314016 Lac5g0266 Lac-Chr5:2586880 6.70E-12 wgd
Lac11g2404 Lac-Chr11:40314016 Lac7g0365 Lac-Chr7:2817085 1.30E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2404 - - - 0.0