Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2406 ATGGATTCACTTGAAACTCCTCCGCCACTTTCAGCACCGTCCAACATGGCGGTCGGAGGACCGACGGCGTATTCTACGGCCATGTCCAACTCCAACAACAATGCCTCTTCCGCGATTGGTCTCAATCAGGCCACGACTCAGATGATGCCGCCTTCTGCGCTCTTTCCGTTTAACTCCGTGATCGCCCCTGCATCCGTGCCTTTGGATTCTTTGAATGTTTCTCCCTATGACGGATCGCATTCCGGGAGTTTCAACGTTGATTCGGGGAAGAAGAAGAGAGGCCGGCCGAGGAAGTACGCGCCTGATGGTGGTAACATTGCCTTGGCTTTGGCGCCTACAACTGTTGCGTCTTCTGTTGCTCACGGGGATTTGAGCGGCACTCCTGATTCGGACCAGCCGGCGAAGAAAGCGAGGGGAAGGCCACCGGGCTCGGGGAAGAAACAGATGAATGCTCTTGGTTCAGGCGGCATTGGTTTTACTCCTCACGTTGTATTGGCGAAGCCTGGAGAGGATGTAGCAGCCAAAATTCTATCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTCGACACCCGGCTACCTCTGGTGGTTCTGTGACATATGAGGGCCAGTATGAGATCATCTCTCTGTCAGGGTCCTTTTTGCTCTCGGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGTTGCTGTCCGGGTCAGACGGACAAGTTCTTGGTGGTGGAGTTGCAGGAATGCTAATGGCAGGTTCTCAAGTGCAGGTGATTGTGGGAAGTTTTCTCGAGGAGGATAAAAAATCCAACACAAGTATGCTGAATTCTGGATCTTCTGCTGCGCCATCCCAAATGATAAACTTTGGTGGTGCAGCAGCGGCAGCAGCCAGCCCTCCGTCGCTAGGGGCATCGAGCGGCGAGTCATCTGCGGAAAATGGAGACAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAACAACACCAGCCAATCGATCCACAATATGCAGATGTACCACCAACTATGGGCAAGCCAAACGCAGCAGTGA 1083 52.17 MDSLETPPPLSAPSNMAVGGPTAYSTAMSNSNNNASSAIGLNQATTQMMPPSALFPFNSVIAPASVPLDSLNVSPYDGSHSGSFNVDSGKKKRGRPRKYAPDGGNIALALAPTTVASSVAHGDLSGTPDSDQPAKKARGRPPGSGKKQMNALGSGGIGFTPHVVLAKPGEDVAAKILSFSQQGPRTVFILSANGTISNATLRHPATSGGSVTYEGQYEIISLSGSFLLSENNGTRSRTGGLSVLLSGSDGQVLGGGVAGMLMAGSQVQVIVGSFLEEDKKSNTSMLNSGSSAAPSQMINFGGAAAAAASPPSLGASSGESSAENGDSPLNNRHPGMFNNTSQSIHNMQMYHQLWASQTQQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40332149 40335844 - Lag0033044.1 Lac11g2406 588264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2406 360 MobiDBLite consensus disorder prediction 119 152 - -
Lac11g2406 360 CDD DUF296 160 274 IPR005175 -
Lac11g2406 360 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Lac11g2406 360 SMART AT_hook_2 135 147 IPR017956 GO:0003677(InterPro)
Lac11g2406 360 SMART AT_hook_2 90 102 IPR017956 GO:0003677(InterPro)
Lac11g2406 360 MobiDBLite consensus disorder prediction 18 37 - -
Lac11g2406 360 MobiDBLite consensus disorder prediction 1 37 - -
Lac11g2406 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
Lac11g2406 360 MobiDBLite consensus disorder prediction 76 104 - -
Lac11g2406 360 MobiDBLite consensus disorder prediction 309 341 - -
Lac11g2406 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Lac11g2406 360 MobiDBLite consensus disorder prediction 313 341 - -
Lac11g2406 360 Gene3D - 161 289 - -
Lac11g2406 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 328 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2406 Lac-Chr11:40332149 Lac6g0075 Lac-Chr6:678997 1.50E-59 dispersed
Lac11g2406 Lac-Chr11:40332149 Lac5g0266 Lac-Chr5:2586880 9.50E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2406 - - - 0.0