Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2414 ATGACGGACTACCGATTACCGCCGACCATGAATCTCTGGGCGGATGAGAACGCCTCGATGATGGACGCCTTCATGACCACCGATCTGAGTTCCTTCTGGGTCAATCCGCCGCAGCCGCAGCAGCTTCCTCAGCCACCCTATTCCTCTGTTTCCGCCGCGCCGGACACGAGTAAAGCCATCGGTCAATCGCCACCGCCGACGTCGGTGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGGCTTCAAGCCTTGATTGAAGGGGCTAACGAGAGCTGGACTTACGCTATCTTCTGGCAGTCCTCGTACGACTACTCCGGCGCCACCGTCTTGGGCTGGGGGGACGGGTACTACAAAGGCGAAGAAGACAAAGGCAAAGAGAAGGCCAAATCGACGACCTCGAAGGCCGAACAAGAGCATCGTAAGAAGGTACTTCGCGAGCTCAACTCTCTCATTTCTGGTTCTCCTACCTCTGAAGACGACGCCGTCGACGAGGTCGTCACCGACACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCCTTCGTCGCCGGCGTCGGATTGCCGGGACAGGCGTTTTTCGACTCGAACCCTATTTGGGTCGCCGGTTCGGATCGGCTTGCGAGCTCGTTCTGCGAACGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACCATGGTTTGTATTCCGTCGGCGAATGGAGTCGTTGAATTGGGTTCGAGTGAGTTGATTTACCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAACAATCTGGAGGTTGAAACTTGGCCAATTAGTGGTGTTGACCAAGGGGAAAACGACCCGTCTTCGCTTTGGATCAGCGAGCCATCAAACGCCATTGAAATTAAGGACCCTGTCACTGTGTGTAGCAATAACAACAACAATCCTGTTGCTTCAGCTCCAGCTCCAGCTCCAACTCCAGCTCCCAGCTCCACAAACAGCCAGCCGATTTCCAAAATTACAACAGAGATTGAAAATCCCAAATCGAGTGTTGTAGCTGAAACTCCAACCTCCGTTCCTCCTTCCCAAAAGAGCCACCGACAGTCGCAGCCGGTTCACACGCAGAGCTTCTTCACCAGGGAATTGAATTTCTCTGAATTTGGCTACGATAATGGCAGCTTCAAGGATGGGAATTCGCATTCTCTCAAGCCGGAATCCGGCGAGATTCTCAACTTTGGCGAGAGCAAGAGGAGTTCTTATCCCAACACAGATAACTTGCCTTCGGGCAATTCCCAATTTGGAGCGGATGAGAACAAGAAGAAGAGATCCCCCACTTCTCGTGGGAGTAATGAAGAGGGGATGCTTTCTTTTACTTCCGGTGTGATTCTTCCATCCTCCGGCACCGCGAAATCGGGCGGTGGCATTGGCGATTCCGACCACTCTGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAGCGGCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCTGAGAGGCAGAGGAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGGGATGCAATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGACAAGGAGGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGCCTAGTAAAGATTCAAGTATATCAAGCTCAAATCAACCCCCACCAGATCAAGACATAAAAGTATCAAACATCCATGGAAACAACAACAACAGTGGTATCAAAACCGATATCGACGTGAAGATAATCAGTTGGGACGCCATGATTCGGATCCAATCTAGTAAGAAAAACCATCCCGCTGCGCGGCTGATGGCAGCTTTGGAAGAACTGGACTTGGATATCAACCACGCAAGCATTTCAGTTGTCAATGATCTGATGATCCAACAAGCAACTGTCAAGATGAGTCGATTATACACTCAGGAGCAGCTAACGATAGCTCTATCATCGAAAATAGGCGCAACTCGGTAG 2088 50.57 MTDYRLPPTMNLWADENASMMDAFMTTDLSSFWVNPPQPQQLPQPPYSSVSAAPDTSKAIGQSPPPTSVAVFNQETLQQRLQALIEGANESWTYAIFWQSSYDYSGATVLGWGDGYYKGEEDKGKEKAKSTTSKAEQEHRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVAGVGLPGQAFFDSNPIWVAGSDRLASSFCERARQGQVFGLQTMVCIPSANGVVELGSSELIYQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWISEPSNAIEIKDPVTVCSNNNNNPVASAPAPAPTPAPSSTNSQPISKITTEIENPKSSVVAETPTSVPPSQKSHRQSQPVHTQSFFTRELNFSEFGYDNGSFKDGNSHSLKPESGEILNFGESKRSSYPNTDNLPSGNSQFGADENKKKRSPTSRGSNEEGMLSFTSGVILPSSGTAKSGGGIGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMPSKDSSISSSNQPPPDQDIKVSNIHGNNNNSGIKTDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLTIALSSKIGATR 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40380498 40382585 - Lag0033052.1 Lac11g2414 588272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2414 695 Coils Coil 552 579 - -
Lac11g2414 695 MobiDBLite consensus disorder prediction 120 139 - -
Lac11g2414 695 MobiDBLite consensus disorder prediction 35 66 - -
Lac11g2414 695 FunFam Transcription factor bHLH13 499 573 - -
Lac11g2414 695 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 77 257 IPR025610 -
Lac11g2414 695 Pfam Plant bHLH transcription factor, ACT-like domain 618 676 IPR054502 -
Lac11g2414 695 CDD bHLH_AtAIB_like 503 578 - -
Lac11g2414 695 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 509 579 IPR036638 GO:0046983(InterPro)
Lac11g2414 695 SMART finulus 512 561 IPR011598 GO:0046983(InterPro)
Lac11g2414 695 MobiDBLite consensus disorder prediction 452 471 - -
Lac11g2414 695 MobiDBLite consensus disorder prediction 322 365 - -
Lac11g2414 695 Pfam Helix-loop-helix DNA-binding domain 510 556 IPR011598 GO:0046983(InterPro)
Lac11g2414 695 MobiDBLite consensus disorder prediction 45 66 - -
Lac11g2414 695 MobiDBLite consensus disorder prediction 403 444 - -
Lac11g2414 695 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 506 555 IPR011598 GO:0046983(InterPro)
Lac11g2414 695 PANTHER MYC 64 690 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lac11g2414 695 MobiDBLite consensus disorder prediction 302 365 - -
Lac11g2414 695 MobiDBLite consensus disorder prediction 403 425 - -
Lac11g2414 695 Gene3D - 505 581 IPR036638 GO:0046983(InterPro)
Lac11g2414 695 MobiDBLite consensus disorder prediction 476 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2414 Lac-Chr11:40380498 Lac7g0130 Lac-Chr7:1037659 2.50E-58 dispersed
Lac11g2414 Lac-Chr11:40380498 Lac5g0235 Lac-Chr5:2102466 9.40E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22968 PF14215 bHLH-MYC_N 5.30E-56 CL0161 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2414 K13422 - csv:101218165 1043.11