Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2423 ATGGGGTCTTATGGCAGTCCTAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTGTATTGTCCTCAGTGGTGCTACATCATGTTTTCACCTCCACCACCCTTGGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCCCTTGTCATTGCAGTTATTGGAATTCTGGCAAGTGCTTTCCTTCTTATAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTCTTGGACTGGAAATGATGACCCAAATGAGGAATTTGAAGACAATCACAACACGACACTTCACGAGCCATGGCATGTGGCCACAACTGGCTTGGATGAGGCACTGATCAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCCGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACTTGGCTCAAATCGCACTCCAATTGCCCGTTGTGTCGTGCTAATATAGTCTCTGTCAATGCTTCTTCTCCAGTTCAACTGCCTGCAAGCACTGTAAATCCCATAACTAGCGAGGTCATGCCAGAGACTTCCCAGGCAAATGACAGTGAGACTGTTTCACAACAATCTGGAAGAAGTTTCGGCCACGACGATGTGATGCAAGCAAGTAATTGTGCGAAGAACTCGGTTCGCGCTTTCAGTGACCTCGGAAATCTGGAGAAAAGAGACACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCCGATGTTCTACGTCTAAACGAAGATGAGTTTGGAGCCATTGATGAAGCAGGAAGCTCAGGTGATGTTGGATCATCCAAACACTCAATGGGAGAAGACAGCAAGTCAAGCCATAGAAAAAGAATCTTACATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTCATTCACTAGGCATGGAAGAGAACACAGGGGAATTGCCCCTGTCTGA 1101 43.96 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAVIGILASAFLLISYYTIISKYCGNTNRLSWTGNDDPNEEFEDNHNTTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVNASSPVQLPASTVNPITSEVMPETSQANDSETVSQQSGRSFGHDDVMQASNCAKNSVRAFSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCSQNHIIIADVLRLNEDEFGAIDEAGSSGDVGSSKHSMGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSFTRHGREHRGIAPV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40471625 40472725 + Lag0033061.1 Lac11g2423 588281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2423 366 FunFam RING-H2 finger protein ATL54 118 191 - -
Lac11g2423 366 MobiDBLite consensus disorder prediction 306 329 - -
Lac11g2423 366 PANTHER RING-H2 FINGER PROTEIN ATL16 27 361 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Lac11g2423 366 SMART ring_2 143 184 IPR001841 -
Lac11g2423 366 CDD RING-H2_EL5-like 142 185 - -
Lac11g2423 366 MobiDBLite consensus disorder prediction 212 236 - -
Lac11g2423 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 194 IPR013083 -
Lac11g2423 366 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Lac11g2423 366 SUPERFAMILY RING/U-box 131 191 - -
Lac11g2423 366 Pfam Ring finger domain 142 185 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2423 Lac-Chr11:40471625 Lac6g0930 Lac-Chr6:8245958 9.40E-41 dispersed
Lac11g2423 Lac-Chr11:40471625 Lac7g0421 Lac-Chr7:3278380 1.30E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68