Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2424 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTATTCAACTTCATCATCTACGATACGATCTCCGCGACGCCGAACGCCTCGCACGGCCACCGCGACTCGTCGGACAACACCTTCTTCTCCGACGACAAGTGTTTGAAACACGATCAAGATCACCAACAACACGGGTTCGAATTAGGCCGCCCGAAACCCAATTCGGCGGTGTCGAGAAAACGCCGCCCGGGCGAGGGAGAAGGCAACCGGGCGGCGACGGCGGCGGGGCCGTTGCAGCAAGGGAAGAAGAAGAGGAAGAGAAAACCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCCCTCATGCCAGAATCCTATGTTCAAAGGGGTGATCAAGCATCCATAGTAGGTGGAGCAGTTGAGTTTGTGAAGGAACTTGAGCATCTTCTAACAAGTCTTGAAGCCAAGAAGCTGCAAATTTTACAGCAAGAAGTGGAAGATCAAGATACAGAAAATCATATAAACAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGTTTCAGCACCATTTGCAACAGTGTTGATGCATTCAGATTATCACAACTGCTCCCAATACTCAACCAAATTCACATCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAATCTCAGAATCCTCTCAACAAGAACCCACAGACAGCTCTTGAAGCTCATTGCAGGCTTGCAGGCTCTTCGCCTCACTATTCTTCATCTCAATGTCACTGACTTCCACCCATTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCTGTAGATGACATAGCAGCAGCAGCTCATCATATGGTGAGAATAATTGAGGAAGAAGCTGTCTTGTGTTGA 969 46.34 MSLDALSSNDLFNFIIYDTISATPNASHGHRDSSDNTFFSDDKCLKHDQDHQQHGFELGRPKPNSAVSRKRRPGEGEGNRAATAAGPLQQGKKKRKRKPKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLTSLEAKKLQILQQEVEDQDTENHINNEDSVRRKLFSVSAPFATVLMHSDYHNCSQYSTKFTSKSKASSADIEVTLIETHANLRILSTRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40474576 40476692 - Lag0033062.1 Lac11g2424 588282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2424 322 Gene3D - 102 188 IPR036638 GO:0046983(InterPro)
Lac11g2424 322 SMART finulus 116 167 IPR011598 GO:0046983(InterPro)
Lac11g2424 322 PANTHER MAX DIMERIZATION, MAD 52 314 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac11g2424 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 176 IPR036638 GO:0046983(InterPro)
Lac11g2424 322 Pfam Helix-loop-helix DNA-binding domain 111 162 IPR011598 GO:0046983(InterPro)
Lac11g2424 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 161 IPR011598 GO:0046983(InterPro)
Lac11g2424 322 Coils Coil 158 178 - -
Lac11g2424 322 MobiDBLite consensus disorder prediction 48 110 - -
Lac11g2424 322 CDD bHLH_AtFAMA_like 113 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2424 Lac-Chr11:40474576 Lac6g0931 Lac-Chr6:8261699 4.00E-51 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22970 PF00010 HLH 1.10E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2424 - - - 0.0