Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2437 | ATGAGAAACCATGGCTCAGTTTCATATGAAGAAGAGGAAGATGATGATCATTGTATGAAGAAGAGGAAGAACAATGAAGAAGAAGAAGATGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCAACAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGACTACTTTCTCATGACTTTTGGCTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGAAAGCTCATTAATATCATTGGCATGGCTTATCTCTTCCCTGAAGAAGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTTTATATCTCAGTGTGGCTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGCGTCAAGCAGCAAAAATGAGAATGGCATATTTAAGATCCATGTTGAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTTATTGCTGCTATAACCAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTCTGCACTATATAAGCCGGTTTATATCAGGATTCATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACTTTATCTATTGTCCCCTTGATTGCACTTGCCGGTGGTCTCTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTTCGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGAGAAGAAAGGGCAGTGAACTTATACAAAGGAGCTCTCAAAAATACCTACAAATATGGTAGAAAAGCTGGTTTGGCTAAGGGACTGGGCCTGGGATCCATGCATTGTGTCCTTTTCTTATCATGGGCTCTGCTAGTTTGGTTCACCAGCGTTATTGTTCACAAGAACATTGCCAATGGTGGAGACTCCTTTACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGACATTTCGGCCTTCGTTCGAGCAAAGGCAGCAGCCTATCCTATCTTTCAGATGATAGAGAGAAACACAGTAAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTAAACAGGCTTGATGGTCATATTCAGTTCAGGGATGTTAATTTCAGCTACCCATCTCGTTCGGATGTAGTTATATTCAATAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACGGTCATATCTTTGATCGAACGATTCTACGAACCGCTTTCTGGAGAGATTCTATTAGATGGTAACAACATCAAGGATCTAGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTCGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACTCTTGAGGACATCACACGTGCAGCAAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAGAATCCATCAATCCTATTGTTGGATGAAGCAACAAGTGCACTAGATGCAGAATCTGAGAAGAGTGTTCAAGAGGCACTCGACCGTGTCATGGTTGGACGAACAACTGTAGTGGTGGCGCATCGCCTATCTACCATAAGGAATGCTGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAAGCCAGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACCGCATCGCTGCAACGTCATCCCTCGATCGGACAGTTGGGTCGACCACCGAGTATAAAGTACTCTCGAGAACTATCTCGTACTACAACAAGCTTCGGTGCAAGTTTTCGGTCTGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAGGAGACTTTACTCCATGGTCGGACCGGATTGGATGTATGGAGTCGTTGGTGTCATTGGAGCCTTTGTCACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTCTATATGGACTGGGATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGAGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTCGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAATGATGTTCCATGCTATTTTGAGAAATGAGATAGGATGGTTTGATGATATAAACAACACAAGTGCTATGCTTTCGTCACGTCTAGAAACCGATGCAACTTTGTTACGAACTATCGTTGTCGATCGCTCTACAATTCTTCTGCAGAATGTAGCTTTGGTCGTTGCATCATTCATCATTGCTTTCATATTGAATTGGAGAATCACTCTAGTCGTACTAGCCACATATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAACACACTGGCTGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTTGATCTATACGCTAAGGAGCTCGTTGAGCCGTCGAAACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTATGGCCTGGCATTGTGGTACGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGTTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCATTAGCAATGGGTGAGACATTGGCATTGGCCCCTGACCTTTTGAAAGGAAACCAGATGGTGGCATCAGTGTTTGAGGTGATGGATCGACAGACCGAGGTGTCGGGCGATGTCGGTGAAGAGCTGAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTGAAAGTGAGAGCAGGCAAGAGTATAGCCTTGGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATAAAGAAACTGAAGCTGAAATCTGTGAGAAAGCACATTGGCCTAGTCCAACAGGAACCGGCTCTTTTCGCGACGTCGATTTTCGAGAACATTGTTTACGGGAAAGAAGGAGGTTCAGAAGGCGAAGTATTGGAAGCAGCAAAGCTTGCCAATGCACATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCGACGAAAGTAGGCGAAAGAGGGATCCAACTTTCGGGTGGGCAACGACAAAGGATAGCCATCGCCAGAGCAGTCCTGAAGAACCCTGAAATACTACTACTCGACGAAGCCACGAGCGCTCTCGATGTCGAATCGGAACGTGTCGTTCAACAAGCCTTAGACAGACTGATGAAGAACAGAACAACTGTGGTGGTTGCACACAGGCTTTCCACCATTCAAAACTGTGACCAAATCTCAGTCATCCAAGATGGGAAGATAGTAGAACAAGGGACTCATTCAAGCCTTTCTGACAACAAGAATGGACCTTATTACAAGTTAATCAACATCCAACAACACCAACAAAGACAGTGA | 3801 | 43.46 | MRNHGSVSYEEEEDDDHCMKKRKNNEEEEDEKKKKKKKKKMQQQNKVAFYKLFAFADFYDYFLMTFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVIVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNRLDGHIQFRDVNFSYPSRSDVVIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSARRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREMMFHAILRNEIGWFDDINNTSAMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSKRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSVRKHIGLVQQEPALFATSIFENIVYGKEGGSEGEVLEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIQNCDQISVIQDGKIVEQGTHSSLSDNKNGPYYKLINIQQHQQRQ | 1266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 40543018 | 40550883 | - | Lag0033075.1 | Lac11g2437 | 588295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2437 | 1266 | Coils | Coil | 9 | 46 | - | - | |
| Lac11g2437 | 1266 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1022 | 1258 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 388 | 624 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | ProSitePatterns | ABC transporters family signature. | 527 | 541 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Lac11g2437 | 1266 | FunFam | ABC transporter B family member 1 | 378 | 627 | - | - | |
| Lac11g2437 | 1266 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 66 | 353 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac11g2437 | 1266 | Pfam | ABC transporter | 407 | 555 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 380 | 626 | IPR027417 | - | |
| Lac11g2437 | 1266 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 692 | 1007 | - | - | |
| Lac11g2437 | 1266 | Gene3D | ABC transporter type 1, transmembrane domain | 8 | 97 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac11g2437 | 1266 | SUPERFAMILY | ABC transporter transmembrane region | 681 | 1003 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac11g2437 | 1266 | PANTHER | ABC TRANSPORTER B FAMILY | 10 | 649 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Lac11g2437 | 1266 | CDD | ABC_MTABC3_MDL1_MDL2 | 1022 | 1260 | - | - | |
| Lac11g2437 | 1266 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Lac11g2437 | 1266 | Gene3D | - | 386 | 639 | IPR027417 | - | |
| Lac11g2437 | 1266 | CDD | ABC_MTABC3_MDL1_MDL2 | 388 | 626 | - | - | |
| Lac11g2437 | 1266 | SUPERFAMILY | ABC transporter transmembrane region | 52 | 358 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac11g2437 | 1266 | ProSitePatterns | ABC transporters family signature. | 1161 | 1175 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | Pfam | ABC transporter transmembrane region | 704 | 974 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac11g2437 | 1266 | Pfam | ABC transporter transmembrane region | 69 | 336 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac11g2437 | 1266 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 64 | 361 | - | - | |
| Lac11g2437 | 1266 | Gene3D | - | 1013 | 1266 | IPR027417 | - | |
| Lac11g2437 | 1266 | Gene3D | ABC transporter type 1, transmembrane domain | 113 | 991 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac11g2437 | 1266 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 703 | 989 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac11g2437 | 1266 | Pfam | ABC transporter | 1041 | 1189 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | SMART | AAA_5 | 415 | 607 | IPR003593 | GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | SMART | AAA_5 | 1049 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| Lac11g2437 | 1266 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1016 | 1260 | IPR027417 | - | |
| Lac11g2437 | 1266 | FunFam | ABC transporter B family member 4 | 1012 | 1265 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2998 | Lac-Chr10:44578630 | Lac11g2437 | Lac-Chr11:40543018 | 0.00E+00 | dispersed | |
| Lac11g2437 | Lac-Chr11:40543018 | Lac2g0133 | Lac-Chr2:1014812 | 0.00E+00 | dispersed | |
| Lac9g2613 | Lac-Chr9:44645657 | Lac11g2437 | Lac-Chr11:40543018 | 1.30E-09 | dispersed | |
| Lac11g2437 | Lac-Chr11:40543018 | Lac8g2676 | Lac-Chr8:44256842 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2437 | K05658 | - | csv:101219304 | 2262.65 |