Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2437 ATGAGAAACCATGGCTCAGTTTCATATGAAGAAGAGGAAGATGATGATCATTGTATGAAGAAGAGGAAGAACAATGAAGAAGAAGAAGATGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCAACAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGACTACTTTCTCATGACTTTTGGCTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGAAAGCTCATTAATATCATTGGCATGGCTTATCTCTTCCCTGAAGAAGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTTTATATCTCAGTGTGGCTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGCGTCAAGCAGCAAAAATGAGAATGGCATATTTAAGATCCATGTTGAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTTATTGCTGCTATAACCAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTCTGCACTATATAAGCCGGTTTATATCAGGATTCATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACTTTATCTATTGTCCCCTTGATTGCACTTGCCGGTGGTCTCTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTTCGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGAGAAGAAAGGGCAGTGAACTTATACAAAGGAGCTCTCAAAAATACCTACAAATATGGTAGAAAAGCTGGTTTGGCTAAGGGACTGGGCCTGGGATCCATGCATTGTGTCCTTTTCTTATCATGGGCTCTGCTAGTTTGGTTCACCAGCGTTATTGTTCACAAGAACATTGCCAATGGTGGAGACTCCTTTACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGACATTTCGGCCTTCGTTCGAGCAAAGGCAGCAGCCTATCCTATCTTTCAGATGATAGAGAGAAACACAGTAAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTAAACAGGCTTGATGGTCATATTCAGTTCAGGGATGTTAATTTCAGCTACCCATCTCGTTCGGATGTAGTTATATTCAATAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACGGTCATATCTTTGATCGAACGATTCTACGAACCGCTTTCTGGAGAGATTCTATTAGATGGTAACAACATCAAGGATCTAGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTCGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACTCTTGAGGACATCACACGTGCAGCAAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAGAATCCATCAATCCTATTGTTGGATGAAGCAACAAGTGCACTAGATGCAGAATCTGAGAAGAGTGTTCAAGAGGCACTCGACCGTGTCATGGTTGGACGAACAACTGTAGTGGTGGCGCATCGCCTATCTACCATAAGGAATGCTGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAAGCCAGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACCGCATCGCTGCAACGTCATCCCTCGATCGGACAGTTGGGTCGACCACCGAGTATAAAGTACTCTCGAGAACTATCTCGTACTACAACAAGCTTCGGTGCAAGTTTTCGGTCTGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAGGAGACTTTACTCCATGGTCGGACCGGATTGGATGTATGGAGTCGTTGGTGTCATTGGAGCCTTTGTCACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTCTATATGGACTGGGATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGAGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTCGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAATGATGTTCCATGCTATTTTGAGAAATGAGATAGGATGGTTTGATGATATAAACAACACAAGTGCTATGCTTTCGTCACGTCTAGAAACCGATGCAACTTTGTTACGAACTATCGTTGTCGATCGCTCTACAATTCTTCTGCAGAATGTAGCTTTGGTCGTTGCATCATTCATCATTGCTTTCATATTGAATTGGAGAATCACTCTAGTCGTACTAGCCACATATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAACACACTGGCTGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTTGATCTATACGCTAAGGAGCTCGTTGAGCCGTCGAAACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTATGGCCTGGCATTGTGGTACGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGTTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCATTAGCAATGGGTGAGACATTGGCATTGGCCCCTGACCTTTTGAAAGGAAACCAGATGGTGGCATCAGTGTTTGAGGTGATGGATCGACAGACCGAGGTGTCGGGCGATGTCGGTGAAGAGCTGAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTGAAAGTGAGAGCAGGCAAGAGTATAGCCTTGGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATAAAGAAACTGAAGCTGAAATCTGTGAGAAAGCACATTGGCCTAGTCCAACAGGAACCGGCTCTTTTCGCGACGTCGATTTTCGAGAACATTGTTTACGGGAAAGAAGGAGGTTCAGAAGGCGAAGTATTGGAAGCAGCAAAGCTTGCCAATGCACATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCGACGAAAGTAGGCGAAAGAGGGATCCAACTTTCGGGTGGGCAACGACAAAGGATAGCCATCGCCAGAGCAGTCCTGAAGAACCCTGAAATACTACTACTCGACGAAGCCACGAGCGCTCTCGATGTCGAATCGGAACGTGTCGTTCAACAAGCCTTAGACAGACTGATGAAGAACAGAACAACTGTGGTGGTTGCACACAGGCTTTCCACCATTCAAAACTGTGACCAAATCTCAGTCATCCAAGATGGGAAGATAGTAGAACAAGGGACTCATTCAAGCCTTTCTGACAACAAGAATGGACCTTATTACAAGTTAATCAACATCCAACAACACCAACAAAGACAGTGA 3801 43.46 MRNHGSVSYEEEEDDDHCMKKRKNNEEEEDEKKKKKKKKKMQQQNKVAFYKLFAFADFYDYFLMTFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVIVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNRLDGHIQFRDVNFSYPSRSDVVIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSARRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREMMFHAILRNEIGWFDDINNTSAMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSKRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSVRKHIGLVQQEPALFATSIFENIVYGKEGGSEGEVLEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIQNCDQISVIQDGKIVEQGTHSSLSDNKNGPYYKLINIQQHQQRQ 1266
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 40543018 40550883 - Lag0033075.1 Lac11g2437 588295
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2437 1266 Coils Coil 9 46 - -
Lac11g2437 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1258 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 388 624 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 MobiDBLite consensus disorder prediction 1 39 - -
Lac11g2437 1266 FunFam ABC transporter B family member 1 378 627 - -
Lac11g2437 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 353 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac11g2437 1266 Pfam ABC transporter 407 555 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 626 IPR027417 -
Lac11g2437 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 692 1007 - -
Lac11g2437 1266 Gene3D ABC transporter type 1, transmembrane domain 8 97 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac11g2437 1266 SUPERFAMILY ABC transporter transmembrane region 681 1003 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac11g2437 1266 PANTHER ABC TRANSPORTER B FAMILY 10 649 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Lac11g2437 1266 CDD ABC_MTABC3_MDL1_MDL2 1022 1260 - -
Lac11g2437 1266 MobiDBLite consensus disorder prediction 1 35 - -
Lac11g2437 1266 Gene3D - 386 639 IPR027417 -
Lac11g2437 1266 CDD ABC_MTABC3_MDL1_MDL2 388 626 - -
Lac11g2437 1266 SUPERFAMILY ABC transporter transmembrane region 52 358 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac11g2437 1266 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 Pfam ABC transporter transmembrane region 704 974 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac11g2437 1266 Pfam ABC transporter transmembrane region 69 336 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac11g2437 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 64 361 - -
Lac11g2437 1266 Gene3D - 1013 1266 IPR027417 -
Lac11g2437 1266 Gene3D ABC transporter type 1, transmembrane domain 113 991 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac11g2437 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 989 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac11g2437 1266 Pfam ABC transporter 1041 1189 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac11g2437 1266 SMART AAA_5 415 607 IPR003593 GO:0016887(InterPro)
Lac11g2437 1266 SMART AAA_5 1049 1221 IPR003593 GO:0016887(InterPro)
Lac11g2437 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1260 IPR027417 -
Lac11g2437 1266 FunFam ABC transporter B family member 4 1012 1265 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2998 Lac-Chr10:44578630 Lac11g2437 Lac-Chr11:40543018 0.00E+00 dispersed
Lac11g2437 Lac-Chr11:40543018 Lac2g0133 Lac-Chr2:1014812 0.00E+00 dispersed
Lac9g2613 Lac-Chr9:44645657 Lac11g2437 Lac-Chr11:40543018 1.30E-09 dispersed
Lac11g2437 Lac-Chr11:40543018 Lac8g2676 Lac-Chr8:44256842 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2437 K05658 - csv:101219304 2262.65