Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2439 ATGTATTTATATCCCTCTTCGTCGCTGAAGAGGGGATCCCGAATTCTATCCCTAAACTCTACTCTCTATTCTCTGCTTTCTCCTCTTGCTCTTACTTTTCCACGCCCTACCGTTCTGTTTGCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACTGGTGTGCAGGTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCATCTACAAATTCACCGTTGGTGGCACGTGAAAGTCAGGTTCTTTGTGGGTTGTTTGGGTTGAGGCGTATATTTTGCATGGTCGTAGTATTTGGGCTATTCGTGCATAAGGAAATGTTTCTTGGTGCTGGAGATTTGTCCCTAGTGTTAAAGATAGTTCATGTCCTCTTTGGTTGGCGTAAACCTAGTCTTTCGTCTAACCTAATGGATCTTGTTTCCTCCATGCTTTTTATTCGGCAAACCTTAGTAGGGAGGATCGAGTGTTGTGACTTCCTTGTGAGTGTGGAGTGTAATGTGCCGTTATTTACCATTTATTATGGAAGGAGCGTAACCATCATGTTCATGGTTCCCTTCTCAATCTTCTCAGGCTTTGATTCAAGTGGTGAGATCAGATATCTTCTTTCGATGTTCATCTTGTTCAATTCGAGTTCTTCCGATCGAAATCGTCCATTCTTTGCCGCTGCCAATACGACCGAACCTCCGCCGGAATTCGCAATGAGAAAGTCCAGAAGAGGAGGCCGGCGGGATGATCAGAATCGAACCAAAGAGGTTTGGGTCGCCAAACACGCGAATCAAACGCAGAATCACTCTTCTACCTCCGATTCACAACGCTCGGACCCCGGGTATCGTCCTTCTACCAGTCGTAATTCCAACTACGAGCATCGGAATCGCCGCCGCTCCCGTCCCCAATCTGTCGAGAAAGCGGAGGTGAGTGCTTTGGCCGATGGAATAGAATCTTTTACTTGCGATGAAGAGCCTCTAGCAGTGGAGGAAAGACGCGGAGTTGTTGTGAATTCGAACAGTGAGATTACAGACGAGGTAGCTGGAAATTCTGGCTCGAGTGAATCTGTGGATGATGTTTTCAGTAGGTTAGAGATGCTGCAGCGTAGTTCCGAGGAGCCAGAGTTATCGGAGGAGCAGCTCAGGATTAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCAATATCCTTGATGAACAGAGAGGGCAGCGCCGTTTCCAGATTTCCGTACACGTTGAGAGTCCTGGTGAGATTGCTGTTACTGCAAAGCTTAACTCATCTGGTGCTCTTGAGATCAAAAGTACTCATTCTGATGAATTCTCTTGTACTTTCAATGTCAAGTATCTTAACCCCATTGTTTTGACCTGTTTATTACCCAAATCATATCCTAGTCACCTACCTCCATATTATACAATCTCCATCCGGTGGTTGGACTCTGCTAGAATTTCCAGTCTTTGCTCTATGTTGGATGCGATATGGACTGAACAAGTGGGGCAGGAAGTTGTATATCCATGGGTAGAATGGCTTCAAATGTCATCTCTGGCCTATCTTCAGATAGATAAAGAGATAACGCTTGGTCCTTATGACAAGGGACATTCAGGAGATGCACGTGCAGTTTCAGGAGGTGTTTCTCCTGAAGTTGATGTTCCTGCAATAAAAAACTATGACAATCAGAGACGTGATGAGGACTTCTGCAAGAACTTGCAGGAATGCTGCATCTGTTTAAGTCAGTATGCAGGTACAACGTTTGTAAGATTGCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAAACATACTCAAACATGCATGTCAAGGAAGGCACTGTAAGCAAACTCAAATGTCCAGACGCCAAATGCGACCTTATGGTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGTGATGAAGAGTTTGAAAGATGGGAATCCATGATGCTCACAAAAACACTGGAATCAATGCCAGATGTGGTTTATTGCCCACGGTGTGAAACCCCCTGCCTAGAGGACGTAGATCATGATGCTCAATGCTCAAAGTGTTACTTCAGTTTTTGTACACTCTGTAGTGAGCGACGTCATGTTGGAATTGAATGCATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAGAATTCATCTCAGTTAAGTAGTGATCAAAGACGAAAGGAACGTGAGATGATTAATGAGCTTATGAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGTCCATCTTGTAAAATGGCAATATCGCGGACCGAGGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTAGCAAGGCAATTGATGGATATGATCATTTCAGGGAGGGCACATGTGAATTGTTCCCGCAAGAAACCATTCAACAGTGGGAAGAGCGCATGAATATACGGCTGGTGATGGGCCAGATTCAAGCAGAACTTTTTCCTGAACATGGTCATCCATGTCCTACTTGTCGCCAAGTTAATGCCAAGGTGAGTAGGAGTAGGACACTTTTACATTCTGATGTCGAGGTCCGTTGA 2556 45.15 MYLYPSSSLKRGSRILSLNSTLYSLLSPLALTFPRPTVLFADLSIGAGVASTTLVCRLLSCRPRLPPSSTNSPLVARESQVLCGLFGLRRIFCMVVVFGLFVHKEMFLGAGDLSLVLKIVHVLFGWRKPSLSSNLMDLVSSMLFIRQTLVGRIECCDFLVSVECNVPLFTIYYGRSVTIMFMVPFSIFSGFDSSGEIRYLLSMFILFNSSSSDRNRPFFAAANTTEPPPEFAMRKSRRGGRRDDQNRTKEVWVAKHANQTQNHSSTSDSQRSDPGYRPSTSRNSNYEHRNRRRSRPQSVEKAEVSALADGIESFTCDEEPLAVEERRGVVVNSNSEITDEVAGNSGSSESVDDVFSRLEMLQRSSEEPELSEEQLRINDQLQEDELLALESIYGENVNILDEQRGQRRFQISVHVESPGEIAVTAKLNSSGALEIKSTHSDEFSCTFNVKYLNPIVLTCLLPKSYPSHLPPYYTISIRWLDSARISSLCSMLDAIWTEQVGQEVVYPWVEWLQMSSLAYLQIDKEITLGPYDKGHSGDARAVSGGVSPEVDVPAIKNYDNQRRDEDFCKNLQECCICLSQYAGTTFVRLPCKHYFCWKCMETYSNMHVKEGTVSKLKCPDAKCDLMVPPGLLKQLLGDEEFERWESMMLTKTLESMPDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIECMTPEMKLRLLEERQNSSQLSSDQRRKEREMINELMSVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGTCELFPQETIQQWEERMNIRLVMGQIQAELFPEHGHPCPTCRQVNAKVSRSRTLLHSDVEVR 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40559921 40566982 + Lag0033077.1 Lac11g2439 588297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2439 851 MobiDBLite consensus disorder prediction 252 283 - -
Lac11g2439 851 ProSitePatterns Zinc finger RING-type signature. 591 600 IPR017907 -
Lac11g2439 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 656 IPR013083 -
Lac11g2439 851 SUPERFAMILY RING/U-box 570 655 - -
Lac11g2439 851 SUPERFAMILY RING/U-box 642 704 - -
Lac11g2439 851 CDD BRcat_RBR_RNF14 653 704 - -
Lac11g2439 851 ProSiteProfiles Zinc finger RING-type profile. 574 622 IPR001841 -
Lac11g2439 851 MobiDBLite consensus disorder prediction 231 251 - -
Lac11g2439 851 Pfam IBR domain, a half RING-finger domain 642 700 IPR002867 GO:0008270(InterPro)
Lac11g2439 851 MobiDBLite consensus disorder prediction 284 299 - -
Lac11g2439 851 SUPERFAMILY UBC-like 378 513 IPR016135 -
Lac11g2439 851 SMART RWD2001b 384 519 IPR006575 GO:0005515(InterPro)
Lac11g2439 851 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 432 791 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lac11g2439 851 FunFam RBR-type E3 ubiquitin transferase 715 821 - -
Lac11g2439 851 SMART ring_2 574 621 IPR001841 -
Lac11g2439 851 SMART ring_2 747 830 IPR001841 -
Lac11g2439 851 ProSiteProfiles RWD domain profile. 384 519 IPR006575 GO:0005515(InterPro)
Lac11g2439 851 CDD Rcat_RBR_RNF14 744 794 IPR047548 GO:0008270(InterPro)
Lac11g2439 851 SUPERFAMILY RING/U-box 733 786 - -
Lac11g2439 851 CDD RING-HC_ITT1-like 571 627 - -
Lac11g2439 851 Gene3D Ubiquitin Conjugating Enzyme 371 523 IPR016135 -
Lac11g2439 851 SMART ibrneu5 642 700 IPR002867 GO:0008270(InterPro)
Lac11g2439 851 SMART ibrneu5 729 791 IPR002867 GO:0008270(InterPro)
Lac11g2439 851 MobiDBLite consensus disorder prediction 218 303 - -
Lac11g2439 851 ProSiteProfiles TRIAD supradomain profile. 570 796 IPR044066 -
Lac11g2439 851 FunFam RBR-type E3 ubiquitin transferase 569 653 - -
Lac11g2439 851 Gene3D - 716 818 - -
Lac11g2439 851 Pfam RWD domain 380 513 IPR006575 GO:0005515(InterPro)
Lac11g2439 851 Pfam IBR domain 744 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2439 K11971 - - csv:101211646 1024.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2439 Lac-Chr11:40559921 Lac11g1877 Lac-Chr11:33887419 3.70E-32 dispersed
Lac11g2439 Lac-Chr11:40559921 Lac7g0851 Lac-Chr7:6898873 4.40E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30