Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2444 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATGTCCAATTTCCAACATTTTCCTTCCATTATACCTAAGGAAGAAAATGGGTTGATGAGAGGGAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCCAGGAATTGAAATGGAAAGTAATGATAATAATAATATTATTCAGCAAAATCAGAAGAAAAAACGTTATCATAGGCATACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGCCGAACCCAAATGAAGGCACAACAAGACAGAGCTGATAATGTGATACTTAGGGCTGAGAATGAGACCTTAAAGAATGAGAATTATAGACTCCAAACTGCCCTAAGAAATATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAGCCAAGCTTGGATGAACAACAGCTTCGCCTTGAGAATGCTAGACTTAGAGAACAGTTAGAACAAGTTTGTTCATTGACTTCAAGATACACTGGACGCCCAATCCAAGGGATGGCCTCCACAGCCCCTCTCATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATGGTTACGTCGTCCGAAATGATGCCGCTGCCATCGATGCTCCCGCCCGAGGCCGCCCACTTCCCGGAGGGCGGTTTGTTAATTGAAGAGGAAAAGACACTTGCAATGGACCTCGCTGTGTCGTCCATGGCTGAACTTTTGAAGATGTGCCGCTCGACCGAGCCTCTTTGGATTCGAGACAACGAGAGCAGTAAGGAAGTTCTAAATGTAGAAGAGCATGCCAGGATGTTCCCATGGCCGTTGAACCTCAAGCAACACTTGATGAATGAGTTTAGTACCGAAGCCACCCGCGACAGCGCCGTGGTTATAATGAATAGCATCACTCTTGTCGATGCCTTTCTCGACGCGAACAAATGGATGGAATTATTTCCATCAATTGTGGCCAAAGCAAAAGCTGTGCAAGTAATTTCATCAAGTGTTTCAAGCCATGGCAGTGGTTCCCTTCAGCTGATGTATGCAGAGCTTGAGGCTCTTTCTCCTCTTATTCCGACGAGAGAAGCCCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGGCAATCGTTGATTTTCCCATCGATAGCTTTCATGACAGTCTTCAGCACTCGTTTCCCAGATACAGGAGAAGGCCATCTGGCTGCATCATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATCACTTTGTTCATAGTGGAATGGCTTTTGGAGCTCAACGCTGGTTGGCCATCTTACAAAGACAATGCGAGAGAATTGCAAGCCTCATGGCTAGAAATATTTCTGACCTTGGAGTGATTCCTTCACCAGAAGCAAGACAGAACCTAATGAAGCTGGCTCAGAGAATGATCAGAACTTTCTCCATCAACATCAGCACCTCGGGCGGCCAGTCGTGGACCGCGCTATCCGATTCTCCGGACGATACCGTCCGTATAACCACCCGGAAGATCGTCGAGCCTGGCCAACCTAACGGGGTTATTCTCAGCGCTGTCTCCACCACTTGGCTTCCCTATCCTCATTACCGAGTCTTTGATCTTCTCCGAGACGAACGACGACGCTCTCAGCTGGAGGTTCTTTCTAATGGGAATTCGTTGCACGAGGTGGCTCACATTGCCAATGGCTCCCACCCTGGAAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAACTGATGCTGCAGGAGAGCTGCACCGACCAGTCCGGCAGCCTCGTCGTCTACGCGACGATCGATGTCGATTCGATCCAATTAGCCATGAGCGGAGAAGACCCCTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCGTCGGGTCGACCGCCAATGATCACCCAGCACCGCCACCCGAAGACGGAACTGCTGCTGCTGCAGTCGTCAACTCCGGCTGCCTCCTTACGGTCGGCCTGCAAGTTCTAGCCAGCACCATTCCATCAGCAAAGCTCAACCTATCTAGCGTGACCGCCATCAACAATCACCTCTGTAACACGGTGCACCAAATCAACGCAGCTCTCGGCAGCCCGACTCGTCCCGACAATGGCAATAGCATTGTCGAGGCGAAAACCGCACCGCCGCCGCCGCCGCCGCCGCCGAAGCAATAA 2424 49.09 MYGDCQVMSSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIIPKEENGLMRGKEDMESGSGSEQLVEENPGIEMESNDNNNIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLREQLEQVCSLTSRYTGRPIQGMASTAPLMQPSLDLDMNIYSRQYTEAMVTSSEMMPLPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSMAELLKMCRSTEPLWIRDNESSKEVLNVEEHARMFPWPLNLKQHLMNEFSTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKAVQVISSSVSSHGSGSLQLMYAELEALSPLIPTREAHFLRCCQQNADEGSWAIVDFPIDSFHDSLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNHFVHSGMAFGAQRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSINISTSGGQSWTALSDSPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVGSTANDHPAPPPEDGTAAAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINAALGSPTRPDNGNSIVEAKTAPPPPPPPPKQ 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40603603 40609045 + Lag0033082.1 Lac11g2444 588302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2444 807 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 779 IPR042160 -
Lac11g2444 807 SMART START_1 291 518 IPR002913 GO:0008289(InterPro)
Lac11g2444 807 ProSiteProfiles START domain profile. 282 521 IPR002913 GO:0008289(InterPro)
Lac11g2444 807 Gene3D - 315 517 IPR023393 -
Lac11g2444 807 SUPERFAMILY Homeodomain-like 79 150 IPR009057 -
Lac11g2444 807 CDD homeodomain 94 150 IPR001356 GO:0003677(InterPro)
Lac11g2444 807 SUPERFAMILY Bet v1-like 284 520 - -
Lac11g2444 807 Coils Coil 197 217 - -
Lac11g2444 807 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Lac11g2444 807 FunFam Homeobox-leucine zipper protein HDG1 77 165 - -
Lac11g2444 807 Pfam Homeodomain 92 147 IPR001356 GO:0003677(InterPro)
Lac11g2444 807 Pfam START domain 293 518 IPR002913 GO:0008289(InterPro)
Lac11g2444 807 SUPERFAMILY Bet v1-like 556 776 - -
Lac11g2444 807 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac11g2444 807 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Lac11g2444 807 CDD START_ArGLABRA2_like 286 517 - -
Lac11g2444 807 Gene3D - 77 160 - -
Lac11g2444 807 MobiDBLite consensus disorder prediction 779 807 - -
Lac11g2444 807 Coils Coil 148 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2444 Lac-Chr11:40603603 Lac12g1799 Lac-Chr12:34276663 1.90E-174 dispersed
Lac11g2444 Lac-Chr11:40603603 Lac12g0611 Lac-Chr12:6484005 2.90E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22973 PF01852 START 2.20E-42 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2444 - - - 0.0