Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2446 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTGCAAATTAGTCCTCCAAATACCAATAAACCCTCTTCCACTTGGAGAAGATCAACAAGCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTGGATTCCTCTAAACACACTCCCAAACACCACCCTAATCATCATCATCTTCTTCATCATCATCACCATCACTCTTTTATTGACCTCTCACTCTCTAACTTAACTCAAATTAACCATCACCAATACTCCACTATTGGTGTTGCTCCTCCTCATCATCACCATCACCACCACCACAATCCCGCCTTCAACGGCAGCGGTCACCTTTGCGAAACCCTACACAAATCCCACCACCGACCCGCCGTCTTCCCCCACAATAATCCCCCGCCGTTGGAGCCACCGCCAGCGACGCCGTTCCCGGGGCAGAACAATGGCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGTCCCGGCGGCGGCGGCGCCGTCGCTCCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTCCACGCTCGCTTTGTTCATGCTGTTGAGCTCCTCGGCGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTGAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAACATTGAAGACATAATATTTGACATTCAAAAGCCAGCTATGGGAAGACAAAATGAGCACTCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCACTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGTTCATCAACAGATCTTTGTGGAGGGACAAATCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1179 48.09 MELFPAQPDLSLQISPPNTNKPSSTWRRSTSSQEEVDLGFWNNLNLDSSKHTPKHHPNHHHLLHHHHHHSFIDLSLSNLTQINHHQYSTIGVAPPHHHHHHHHNPAFNGSGHLCETLHKSHHRPAVFPHNNPPPLEPPPATPFPGQNNGQDLGFLRPIRGIPVYHQTTNPAGPGGGGAVAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNEHSVQQTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCGGTNPQKPNLEFTLGRPV 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40653609 40657492 + Lag0033084.1 Lac11g2446 588304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2446 392 Gene3D - 207 264 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 1 31 - -
Lac11g2446 392 FunFam Myb family transcription factor 206 264 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 11 31 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 342 392 - -
Lac11g2446 392 SUPERFAMILY Homeodomain-like 205 261 IPR009057 -
Lac11g2446 392 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677(InterPro)
Lac11g2446 392 Pfam Myb-like DNA-binding domain 209 260 IPR001005 -
Lac11g2446 392 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 391 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Lac11g2446 392 MobiDBLite consensus disorder prediction 361 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2446 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2446 Lac-Chr11:40653609 Lac6g0365 Lac-Chr6:3024334 1.80E-29 dispersed
Lac11g0313 Lac-Chr11:3200562 Lac11g2446 Lac-Chr11:40653609 9.40E-40 transposed
Lac8g1966 Lac-Chr8:38109935 Lac11g2446 Lac-Chr11:40653609 4.50E-30 transposed
Lac11g2446 Lac-Chr11:40653609 Lac5g0191 Lac-Chr5:1631800 1.10E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22975 None None None None Lac TF