Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2446 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTGCAAATTAGTCCTCCAAATACCAATAAACCCTCTTCCACTTGGAGAAGATCAACAAGCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTGGATTCCTCTAAACACACTCCCAAACACCACCCTAATCATCATCATCTTCTTCATCATCATCACCATCACTCTTTTATTGACCTCTCACTCTCTAACTTAACTCAAATTAACCATCACCAATACTCCACTATTGGTGTTGCTCCTCCTCATCATCACCATCACCACCACCACAATCCCGCCTTCAACGGCAGCGGTCACCTTTGCGAAACCCTACACAAATCCCACCACCGACCCGCCGTCTTCCCCCACAATAATCCCCCGCCGTTGGAGCCACCGCCAGCGACGCCGTTCCCGGGGCAGAACAATGGCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGTCCCGGCGGCGGCGGCGCCGTCGCTCCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTCCACGCTCGCTTTGTTCATGCTGTTGAGCTCCTCGGCGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTGAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAACATTGAAGACATAATATTTGACATTCAAAAGCCAGCTATGGGAAGACAAAATGAGCACTCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCACTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGTTCATCAACAGATCTTTGTGGAGGGACAAATCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1179 48.09 MELFPAQPDLSLQISPPNTNKPSSTWRRSTSSQEEVDLGFWNNLNLDSSKHTPKHHPNHHHLLHHHHHHSFIDLSLSNLTQINHHQYSTIGVAPPHHHHHHHHNPAFNGSGHLCETLHKSHHRPAVFPHNNPPPLEPPPATPFPGQNNGQDLGFLRPIRGIPVYHQTTNPAGPGGGGAVAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNEHSVQQTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCGGTNPQKPNLEFTLGRPV 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40653609 40657492 + Lag0033084.1 Lac11g2446 588304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2446 392 Gene3D - 207 264 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 1 31 - -
Lac11g2446 392 FunFam Myb family transcription factor 206 264 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 11 31 - -
Lac11g2446 392 MobiDBLite consensus disorder prediction 342 392 - -
Lac11g2446 392 SUPERFAMILY Homeodomain-like 205 261 IPR009057 -
Lac11g2446 392 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677(InterPro)
Lac11g2446 392 Pfam Myb-like DNA-binding domain 209 260 IPR001005 -
Lac11g2446 392 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 391 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Lac11g2446 392 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2446 Lac-Chr11:40653609 Lac6g0365 Lac-Chr6:3024334 1.80E-29 dispersed
Lac11g0313 Lac-Chr11:3200562 Lac11g2446 Lac-Chr11:40653609 9.40E-40 transposed
Lac8g1966 Lac-Chr8:38109935 Lac11g2446 Lac-Chr11:40653609 4.50E-30 transposed
Lac11g2446 Lac-Chr11:40653609 Lac5g0191 Lac-Chr5:1631800 1.10E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22975 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2446 - - - 0.0