Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2446 | ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTGCAAATTAGTCCTCCAAATACCAATAAACCCTCTTCCACTTGGAGAAGATCAACAAGCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTGGATTCCTCTAAACACACTCCCAAACACCACCCTAATCATCATCATCTTCTTCATCATCATCACCATCACTCTTTTATTGACCTCTCACTCTCTAACTTAACTCAAATTAACCATCACCAATACTCCACTATTGGTGTTGCTCCTCCTCATCATCACCATCACCACCACCACAATCCCGCCTTCAACGGCAGCGGTCACCTTTGCGAAACCCTACACAAATCCCACCACCGACCCGCCGTCTTCCCCCACAATAATCCCCCGCCGTTGGAGCCACCGCCAGCGACGCCGTTCCCGGGGCAGAACAATGGCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGTCCCGGCGGCGGCGGCGCCGTCGCTCCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTCCACGCTCGCTTTGTTCATGCTGTTGAGCTCCTCGGCGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTGAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAACATTGAAGACATAATATTTGACATTCAAAAGCCAGCTATGGGAAGACAAAATGAGCACTCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCACTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGTTCATCAACAGATCTTTGTGGAGGGACAAATCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA | 1179 | 48.09 | MELFPAQPDLSLQISPPNTNKPSSTWRRSTSSQEEVDLGFWNNLNLDSSKHTPKHHPNHHHLLHHHHHHSFIDLSLSNLTQINHHQYSTIGVAPPHHHHHHHHNPAFNGSGHLCETLHKSHHRPAVFPHNNPPPLEPPPATPFPGQNNGQDLGFLRPIRGIPVYHQTTNPAGPGGGGAVAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNEHSVQQTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCGGTNPQKPNLEFTLGRPV | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 40653609 | 40657492 | + | Lag0033084.1 | Lac11g2446 | 588304 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2446 | 392 | Gene3D | - | 207 | 264 | - | - | |
Lac11g2446 | 392 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lac11g2446 | 392 | FunFam | Myb family transcription factor | 206 | 264 | - | - | |
Lac11g2446 | 392 | MobiDBLite | consensus disorder prediction | 11 | 31 | - | - | |
Lac11g2446 | 392 | MobiDBLite | consensus disorder prediction | 342 | 392 | - | - | |
Lac11g2446 | 392 | SUPERFAMILY | Homeodomain-like | 205 | 261 | IPR009057 | - | |
Lac11g2446 | 392 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 208 | 261 | IPR006447 | GO:0003677(InterPro) | |
Lac11g2446 | 392 | Pfam | Myb-like DNA-binding domain | 209 | 260 | IPR001005 | - | |
Lac11g2446 | 392 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 6 | 391 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Lac11g2446 | 392 | MobiDBLite | consensus disorder prediction | 361 | 384 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2446 | Lac-Chr11:40653609 | Lac6g0365 | Lac-Chr6:3024334 | 1.80E-29 | dispersed | |
Lac11g0313 | Lac-Chr11:3200562 | Lac11g2446 | Lac-Chr11:40653609 | 9.40E-40 | transposed | |
Lac8g1966 | Lac-Chr8:38109935 | Lac11g2446 | Lac-Chr11:40653609 | 4.50E-30 | transposed | |
Lac11g2446 | Lac-Chr11:40653609 | Lac5g0191 | Lac-Chr5:1631800 | 1.10E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22975 | None | None | None | None | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2446 | - | - | - | 0.0 |