Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2454 ATGCTTAAAAGAGAAGAGGAAAGCTTCAAAAACCTAACAATGGCGAGCTTCGGGATTGCAAACGAGGCTGAGATTGACGAACAGACAAAAACTTCAGGGAGAACGAACGGATGGTGCTCTCGAAGCGCGTATGGAGGCAAGAAGCTGAGAGAAGCAGAAGAACGCCTCTCGGGTTTATTTAAGGTGCAGGTAGTTCACATATTCACGGACATGTCTATTTCATCGAGCCTCTATCCGAGACAATGCCCAGATCGTTACGCCTTTCGTAAAACAGTGAAAACGTCAGCGACGAGGTACGTCGAGGTTCGAATCCCGGACTCTGCTCCGTGGACTATCGGGTCTCCTGTCTCTGCTAGCTCTCAAGGTCTTCAAGCTTCAAGCTCGAGCAATTTCTGTTTGAAGAAATCTCTATACAAATTCTCATACTTCCTGATTTTGTTAAGCCTCTGTATGATTTCGCTTGCATTCAGTCAGGAAAGATTGAAGTCGTTGAATTTTGAAAGCGATCCCATATGTATCTCTCGAAATGCAACTTATCCCTTCACCTTTGGAGTAGAGAGGCCGGCTTCTCTGGTTAGTGGGGTTACTACTCGCTTTTATTTGGAAATTTTGCTTAGAAAAATCATGGGTGGCAGTGAGATGAATAAATCAGCGAAGGAGGAACCCAAGACAACGCCTGCCACCACACAGGAACAGTCTCCAAACACAGGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCACCAATACCTCCACCAGGATATTTGGCAACAAGCCCCCAAGCACACCCATATATGTGGGGGGTTCAGCCCATTATGCCCCCTTATGGAACCCCTCCACATCCCTACGTCGCAATGTATCCCCATGGGGGCATATATGCTCATCCGCCCATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGAAACATGGAAGGGGATGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCAAAAGGAAGTCTGGGAAGTTTAAACATGATAACTGGGAAGAACAATGAACTTGGTAAAACATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAAAATGAAGGACACAATCTCGCTCATTCATTAGTAAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATCTGAATATAGGGATGGATTATTGGGGTACTCCAACAACTTCTGCCATCCCTTCGTTGTGTGGGAAGGTTCCTTCCGCTCCGGTTGCAGGAGCTGCTGCTGCTGGGTCACGAGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGATGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGTGATGAGCTGTCCCAGCGCGCCGAAGCTTTAAAGGAAGAAAATGCAAGCCTTAGATCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGACTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGACAGCCAAAATTTGAATAAACAAGCTCAGCATACATCCCGGACCGAACTCGCTAAGGGGTAA 1830 45.19 MLKREEESFKNLTMASFGIANEAEIDEQTKTSGRTNGWCSRSAYGGKKLREAEERLSGLFKVQVVHIFTDMSISSSLYPRQCPDRYAFRKTVKTSATRYVEVRIPDSAPWTIGSPVSASSQGLQASSSSNFCLKKSLYKFSYFLILLSLCMISLAFSQERLKSLNFESDPICISRNATYPFTFGVERPASLVSGVTTRFYLEILLRKIMGGSEMNKSAKEEPKTTPATTQEQSPNTGTGIVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHNLAHSLVNQTMSIIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVAGAAAAGSRDSIQSQIWLQDEREMKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDSQNLNKQAQHTSRTELAKG 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40730895 40740249 - Lag0033092.1 Lac11g2454 588312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2454 609 Pfam Disordered region downstream of MFMR 342 475 - -
Lac11g2454 609 Pfam bZIP transcription factor 507 569 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 Gene3D - 510 564 - -
Lac11g2454 609 MobiDBLite consensus disorder prediction 353 384 - -
Lac11g2454 609 SMART brlzneu 507 571 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 PANTHER G-BOX-BINDING FACTOR 3-RELATED 225 602 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Lac11g2454 609 MobiDBLite consensus disorder prediction 221 242 - -
Lac11g2454 609 MobiDBLite consensus disorder prediction 591 609 - -
Lac11g2454 609 CDD bZIP_plant_GBF1 512 562 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 MobiDBLite consensus disorder prediction 320 428 - -
Lac11g2454 609 Coils Coil 520 575 - -
Lac11g2454 609 MobiDBLite consensus disorder prediction 573 590 - -
Lac11g2454 609 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 509 572 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 MobiDBLite consensus disorder prediction 567 609 - -
Lac11g2454 609 SUPERFAMILY Leucine zipper domain 510 566 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 Pfam G-box binding protein MFMR 209 303 IPR012900 -
Lac11g2454 609 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 514 529 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2454 609 MobiDBLite consensus disorder prediction 506 535 - -
Lac11g2454 609 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2454 Lac-Chr11:40730895 Lac1g2892 Lac-Chr1:49833100 5.20E-28 dispersed
Lac11g2454 Lac-Chr11:40730895 Lac5g0179 Lac-Chr5:1506080 5.80E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22977 PF16596 MFMR_assoc 9.30E-50 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2454 K09060 - csv:101214217 722.235