Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2454 | ATGCTTAAAAGAGAAGAGGAAAGCTTCAAAAACCTAACAATGGCGAGCTTCGGGATTGCAAACGAGGCTGAGATTGACGAACAGACAAAAACTTCAGGGAGAACGAACGGATGGTGCTCTCGAAGCGCGTATGGAGGCAAGAAGCTGAGAGAAGCAGAAGAACGCCTCTCGGGTTTATTTAAGGTGCAGGTAGTTCACATATTCACGGACATGTCTATTTCATCGAGCCTCTATCCGAGACAATGCCCAGATCGTTACGCCTTTCGTAAAACAGTGAAAACGTCAGCGACGAGGTACGTCGAGGTTCGAATCCCGGACTCTGCTCCGTGGACTATCGGGTCTCCTGTCTCTGCTAGCTCTCAAGGTCTTCAAGCTTCAAGCTCGAGCAATTTCTGTTTGAAGAAATCTCTATACAAATTCTCATACTTCCTGATTTTGTTAAGCCTCTGTATGATTTCGCTTGCATTCAGTCAGGAAAGATTGAAGTCGTTGAATTTTGAAAGCGATCCCATATGTATCTCTCGAAATGCAACTTATCCCTTCACCTTTGGAGTAGAGAGGCCGGCTTCTCTGGTTAGTGGGGTTACTACTCGCTTTTATTTGGAAATTTTGCTTAGAAAAATCATGGGTGGCAGTGAGATGAATAAATCAGCGAAGGAGGAACCCAAGACAACGCCTGCCACCACACAGGAACAGTCTCCAAACACAGGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCACCAATACCTCCACCAGGATATTTGGCAACAAGCCCCCAAGCACACCCATATATGTGGGGGGTTCAGCCCATTATGCCCCCTTATGGAACCCCTCCACATCCCTACGTCGCAATGTATCCCCATGGGGGCATATATGCTCATCCGCCCATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGAAACATGGAAGGGGATGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCAAAAGGAAGTCTGGGAAGTTTAAACATGATAACTGGGAAGAACAATGAACTTGGTAAAACATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAAAATGAAGGACACAATCTCGCTCATTCATTAGTAAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATCTGAATATAGGGATGGATTATTGGGGTACTCCAACAACTTCTGCCATCCCTTCGTTGTGTGGGAAGGTTCCTTCCGCTCCGGTTGCAGGAGCTGCTGCTGCTGGGTCACGAGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGATGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGTGATGAGCTGTCCCAGCGCGCCGAAGCTTTAAAGGAAGAAAATGCAAGCCTTAGATCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGACTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGACAGCCAAAATTTGAATAAACAAGCTCAGCATACATCCCGGACCGAACTCGCTAAGGGGTAA | 1830 | 45.19 | MLKREEESFKNLTMASFGIANEAEIDEQTKTSGRTNGWCSRSAYGGKKLREAEERLSGLFKVQVVHIFTDMSISSSLYPRQCPDRYAFRKTVKTSATRYVEVRIPDSAPWTIGSPVSASSQGLQASSSSNFCLKKSLYKFSYFLILLSLCMISLAFSQERLKSLNFESDPICISRNATYPFTFGVERPASLVSGVTTRFYLEILLRKIMGGSEMNKSAKEEPKTTPATTQEQSPNTGTGIVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHNLAHSLVNQTMSIIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVAGAAAAGSRDSIQSQIWLQDEREMKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDSQNLNKQAQHTSRTELAKG | 609 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 40730895 | 40740249 | - | Lag0033092.1 | Lac11g2454 | 588312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2454 | 609 | Pfam | Disordered region downstream of MFMR | 342 | 475 | - | - | |
Lac11g2454 | 609 | Pfam | bZIP transcription factor | 507 | 569 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | Gene3D | - | 510 | 564 | - | - | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 353 | 384 | - | - | |
Lac11g2454 | 609 | SMART | brlzneu | 507 | 571 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 225 | 602 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER) | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 221 | 242 | - | - | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 591 | 609 | - | - | |
Lac11g2454 | 609 | CDD | bZIP_plant_GBF1 | 512 | 562 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 320 | 428 | - | - | |
Lac11g2454 | 609 | Coils | Coil | 520 | 575 | - | - | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 573 | 590 | - | - | |
Lac11g2454 | 609 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 509 | 572 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 567 | 609 | - | - | |
Lac11g2454 | 609 | SUPERFAMILY | Leucine zipper domain | 510 | 566 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | Pfam | G-box binding protein MFMR | 209 | 303 | IPR012900 | - | |
Lac11g2454 | 609 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 514 | 529 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 506 | 535 | - | - | |
Lac11g2454 | 609 | MobiDBLite | consensus disorder prediction | 214 | 242 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2454 | Lac-Chr11:40730895 | Lac1g2892 | Lac-Chr1:49833100 | 5.20E-28 | dispersed | |
Lac11g2454 | Lac-Chr11:40730895 | Lac5g0179 | Lac-Chr5:1506080 | 5.80E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22977 | PF16596 | MFMR_assoc | 9.30E-50 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2454 | K09060 | - | csv:101214217 | 722.235 |