Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2460 ATGGCAGTTTGTACAGTGTACACAACCCAATCCCTAAACTCAACCTTCTCATCAACAACAACAAAATCCCACTTGGGATTCTACCAAAAGCACCAGCAGCAACTGGTTTTCTTGAGCAGCAATGGGAAGAAATGGGGAAGCAGTAAAAGAGACGGTCACAGCAGCGTGACCAACCCTTATGTGATAACCTGCTCCGCGGGTGAGCAACAGACAGTGGTGATTGGTCTGGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTCATGAGGAGGCTGACAAGTGTTTTTGGAGGGGCAGCAGAGCCACCAAAGGGCGGTAACCCAGATTCAAACACACTCATCAGTGACACTACCACTGTCATATGTTTAGATGACTATCACTCATTGGACAGAACAGGGAGAAAAGAGAAAGGAGTCACAGCACTTGACCCAAAAGCCAATGATTTTGACCTCATGTATGAACAAGTAAAAGCACTTAAAAATGGTGTGGCTGTTGATAAGCCTATTTACAACCATGTCACTGGCCTTCTTGACCCTCCTGAGCTCATTAAACCTCCTAAAATCCTTGTCATTGAAGGCTTACACCCAATGTTTGATTCAAGAGTAAGAGACCTGCTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTTAAATTTGCATGGAAAATTCAGAGGGACATGGCTGAGAGAGGACACAGTCTCGAAAGCATCAAAGCGAGTATCGAAGCCCGAAAACCCGACTTTGACGCCTATATCGACCCACAGAAGCAATATGCAGATGCAGTGATAGAAGTGCTTCCTACAAAACTGATTCCTGATGATAATGAAGGAAAAGTTTTGAGAGTAAGGCTGATAATGAAGGAAGGGGTGGAGTTTTTTAACCCAGTTTATTTGTTTGATGAAGGCTCTTCAATTTCATGGATTCCATGTGGAAGAAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTCCTATGGCCCTGAAACTTACTATGGCCAAGAGGTATCGGTACTGGAAATGGACGGCCAATTCGACAGGCTCGACGAGCTCATCTATGTCGAAAGCCATCTGAGCAATCTGTCGACAAAATTCTACGGCGAAGTGACTCAACAGATGCTGAAGCACTCGGACTTCCCTGGAAGCAACAACGGCACAGGCTTCTTCCAAACCATAGTCGGATTGAAGATCAGAGACCTGTACGAGCAGATATCCGCCAGCAAGGCCAAGGCGCTACAGGCCGCGAAAGCCTGA 1251 46.04 MAVCTVYTTQSLNSTFSSTTTKSHLGFYQKHQQQLVFLSSNGKKWGSSKRDGHSSVTNPYVITCSAGEQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKALKNGVAVDKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTKLIPDDNEGKVLRVRLIMKEGVEFFNPVYLFDEGSSISWIPCGRKLTCSYPGIKFSYGPETYYGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHSDFPGSNNGTGFFQTIVGLKIRDLYEQISASKAKALQAAKA 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40789991 40794088 + Lag0033098.1 Lac11g2460 588318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2460 416 PANTHER URIDINE KINASE 69 349 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Lac11g2460 416 FunFam Phosphoribulokinase 68 298 - -
Lac11g2460 416 CDD PRK 73 362 - -
Lac11g2460 416 Pfam Phosphoribulokinase / Uridine kinase family 73 271 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lac11g2460 416 ProSitePatterns Phosphoribulokinase signature. 222 235 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lac11g2460 416 Gene3D - 68 306 IPR027417 -
Lac11g2460 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 342 IPR027417 -
Lac11g2460 416 PRINTS Phosphoribulokinase family signature 222 239 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lac11g2460 416 PRINTS Phosphoribulokinase family signature 78 95 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lac11g2460 416 PRINTS Phosphoribulokinase family signature 187 205 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lac11g2460 416 PRINTS Phosphoribulokinase family signature 240 263 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2460 K00855 - - csv:101220055 764.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2460 Lac-Chr11:40789991 Lac5g0168 Lac-Chr5:1427694 1.70E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64