Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2462 ATGGCACCGACCCTGAACGATCACTTTAGCCGTCCCACGCCAAAAAAACAAACTCTCCAGACAAGAAAAACTCCTCGCTCTGAACTCTCCAACAAATATCCTGAGTGGTATTCACCAGATACAGGAATCTATAGCAGTCTCCATTCCTCCAGAGACTTACCCTCCGACCCATTTCTTGACGTTGTCTCTTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTTTCATCGATTCCTCAACTGGGCATTCAATTTCCTACAGAGAACTGTTTCCCATGGTCAAATCCGTGGCTTCTGGGCTTCACAAATTGGGCATTTCACAAGGAGACGTAGTTTTGCTTATGTTACCAAATTCCATTTTCTTTCCCGTCCTTGTTTTGGGTGTCATGTATTTGGGAGCAGTCGTTACGACCATGTTTCCTCAAAGCACTTCCTCAGAAATCAAGAAACGAATCAGTGATTGCAATGTGCGTCTGGCTTTGGCAATACCTCAGAAATTTGGGGATTTTGAAGCAGTGGGAATTCCGGCAATCCCAGTACCAGAAAATGTGAACTTGGGCTTGATGAAGTTGAAGCCTATGGGATTTTCTTCTTTTTTTGAGCTTATTTCAGGACGGTTTGATTTGGATAAAAGACCAGTGATTAAACAGCAAGATACAGCTGCTATATTGTATTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGCTGTCACACAGAAATTTTATATCTATGGTCGAGCATTTTGTCAGGTTTGAAGCTTCACAGTATGAATATTTGACTACAGAAAATGTGTATTTAGCTGTTATACCAATGTTTCATATATATGGTCTCTCCTTTTTTGTGATGGGGTTACTGTCATTGGGCTCTAGTGTTGTTGTCTTGAGAAAATTTGATATCAAAGAAGTGGTCAAGGCCATTGATAGATTTAAAGTCACACATTTTCCAGTTGTTCCTCCAATACTCACAGCTCTGGCTAAGGCTGCACAGAAAGTTGGTGTACATAGATTTCAGAGTTTGAAGCAAGTTTCTTGTGGGGCTGCTACTTTGATCAAGAAGACCAGAGATGACTTTCTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACTCGTGGCTTCAATACCAAAAAGGCTCAAAAGTATTCGTCAGTGGGACTTTTAGCTCCAAACATGGAAGCTAAAGTAGTTGATTGGGTTAGCGGATCTTTCATGCCTCCTGGTAAAACTGGGGAACTTCTGTTGCGCGGACCTGGTTTGATGAAAGGTTACTTGAACAATCCAGAGGCAACGATGTCCACAATAGACGAAGAAAATTGGCTACACACTGGAGACATCGTCTACTTCGACCAAGAGGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAATACAAAGGCTTTCAGATTGCTCCTTCTGATATAGAAGCTGTGGTGACCACACATCCAGAAGTTGTTGATGTTGCAGTAACAGCGGCCATTGATGAAGAATGTGGGGAGATTCCTGTGGCATTTGTCATCAAGAAGCCAGGAAGCAAACTCTCACAGAAAGATGTTATAGATTTTGTTGCTCAACAGGTTGCTCCATATAAAAAAGTCAGAAAAGTGGTTTTTACAGAAGTGATTCCGAAGTCTGCTGCTGGCAAAGTATTGCGCAGGGAACTGAAGAATCGCTTGTCTTCAAAACTCTGA 1731 42.29 MAPTLNDHFSRPTPKKQTLQTRKTPRSELSNKYPEWYSPDTGIYSSLHSSRDLPSDPFLDVVSFIFSFQHNGHSAFIDSSTGHSISYRELFPMVKSVASGLHKLGISQGDVVLLMLPNSIFFPVLVLGVMYLGAVVTTMFPQSTSSEIKKRISDCNVRLALAIPQKFGDFEAVGIPAIPVPENVNLGLMKLKPMGFSSFFELISGRFDLDKRPVIKQQDTAAILYSSGTTGVSKGVMLSHRNFISMVEHFVRFEASQYEYLTTENVYLAVIPMFHIYGLSFFVMGLLSLGSSVVVLRKFDIKEVVKAIDRFKVTHFPVVPPILTALAKAAQKVGVHRFQSLKQVSCGAATLIKKTRDDFLQALPHVDFIQGYGMTESTAVGTRGFNTKKAQKYSSVGLLAPNMEAKVVDWVSGSFMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDEENWLHTGDIVYFDQEGYLYVVDRLKEVIKYKGFQIAPSDIEAVVTTHPEVVDVAVTAAIDEECGEIPVAFVIKKPGSKLSQKDVIDFVAQQVAPYKKVRKVVFTEVIPKSAAGKVLRRELKNRLSSKL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40805916 40810323 - Lag0033100.1 Lac11g2462 588320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2462 576 Gene3D - 474 575 IPR045851 -
Lac11g2462 576 Pfam AMP-binding enzyme 70 436 IPR000873 -
Lac11g2462 576 MobiDBLite consensus disorder prediction 1 33 - -
Lac11g2462 576 Gene3D - 48 473 IPR042099 -
Lac11g2462 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 569 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Lac11g2462 576 MobiDBLite consensus disorder prediction 10 27 - -
Lac11g2462 576 FunFam Long-chain-fatty-acid--CoA ligase FadD 49 473 - -
Lac11g2462 576 SUPERFAMILY Acetyl-CoA synthetase-like 69 572 - -
Lac11g2462 576 CDD 4CL 53 568 - -
Lac11g2462 576 Pfam AMP-binding enzyme C-terminal domain 488 562 IPR025110 -
Lac11g2462 576 ProSitePatterns Putative AMP-binding domain signature. 223 234 IPR020845 -
Lac11g2462 576 FunFam 4-coumarate--CoA ligase 2 474 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2462 Lac-Chr11:40805916 Lac2g0105 Lac-Chr2:785034 1.60E-119 dispersed
Lac11g2462 Lac-Chr11:40805916 Lac11g0573 Lac-Chr11:5816331 2.60E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2462 K01904 - csv:101219578 892.108