Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2462 | ATGGCACCGACCCTGAACGATCACTTTAGCCGTCCCACGCCAAAAAAACAAACTCTCCAGACAAGAAAAACTCCTCGCTCTGAACTCTCCAACAAATATCCTGAGTGGTATTCACCAGATACAGGAATCTATAGCAGTCTCCATTCCTCCAGAGACTTACCCTCCGACCCATTTCTTGACGTTGTCTCTTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTTTCATCGATTCCTCAACTGGGCATTCAATTTCCTACAGAGAACTGTTTCCCATGGTCAAATCCGTGGCTTCTGGGCTTCACAAATTGGGCATTTCACAAGGAGACGTAGTTTTGCTTATGTTACCAAATTCCATTTTCTTTCCCGTCCTTGTTTTGGGTGTCATGTATTTGGGAGCAGTCGTTACGACCATGTTTCCTCAAAGCACTTCCTCAGAAATCAAGAAACGAATCAGTGATTGCAATGTGCGTCTGGCTTTGGCAATACCTCAGAAATTTGGGGATTTTGAAGCAGTGGGAATTCCGGCAATCCCAGTACCAGAAAATGTGAACTTGGGCTTGATGAAGTTGAAGCCTATGGGATTTTCTTCTTTTTTTGAGCTTATTTCAGGACGGTTTGATTTGGATAAAAGACCAGTGATTAAACAGCAAGATACAGCTGCTATATTGTATTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGCTGTCACACAGAAATTTTATATCTATGGTCGAGCATTTTGTCAGGTTTGAAGCTTCACAGTATGAATATTTGACTACAGAAAATGTGTATTTAGCTGTTATACCAATGTTTCATATATATGGTCTCTCCTTTTTTGTGATGGGGTTACTGTCATTGGGCTCTAGTGTTGTTGTCTTGAGAAAATTTGATATCAAAGAAGTGGTCAAGGCCATTGATAGATTTAAAGTCACACATTTTCCAGTTGTTCCTCCAATACTCACAGCTCTGGCTAAGGCTGCACAGAAAGTTGGTGTACATAGATTTCAGAGTTTGAAGCAAGTTTCTTGTGGGGCTGCTACTTTGATCAAGAAGACCAGAGATGACTTTCTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACTCGTGGCTTCAATACCAAAAAGGCTCAAAAGTATTCGTCAGTGGGACTTTTAGCTCCAAACATGGAAGCTAAAGTAGTTGATTGGGTTAGCGGATCTTTCATGCCTCCTGGTAAAACTGGGGAACTTCTGTTGCGCGGACCTGGTTTGATGAAAGGTTACTTGAACAATCCAGAGGCAACGATGTCCACAATAGACGAAGAAAATTGGCTACACACTGGAGACATCGTCTACTTCGACCAAGAGGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAATACAAAGGCTTTCAGATTGCTCCTTCTGATATAGAAGCTGTGGTGACCACACATCCAGAAGTTGTTGATGTTGCAGTAACAGCGGCCATTGATGAAGAATGTGGGGAGATTCCTGTGGCATTTGTCATCAAGAAGCCAGGAAGCAAACTCTCACAGAAAGATGTTATAGATTTTGTTGCTCAACAGGTTGCTCCATATAAAAAAGTCAGAAAAGTGGTTTTTACAGAAGTGATTCCGAAGTCTGCTGCTGGCAAAGTATTGCGCAGGGAACTGAAGAATCGCTTGTCTTCAAAACTCTGA | 1731 | 42.29 | MAPTLNDHFSRPTPKKQTLQTRKTPRSELSNKYPEWYSPDTGIYSSLHSSRDLPSDPFLDVVSFIFSFQHNGHSAFIDSSTGHSISYRELFPMVKSVASGLHKLGISQGDVVLLMLPNSIFFPVLVLGVMYLGAVVTTMFPQSTSSEIKKRISDCNVRLALAIPQKFGDFEAVGIPAIPVPENVNLGLMKLKPMGFSSFFELISGRFDLDKRPVIKQQDTAAILYSSGTTGVSKGVMLSHRNFISMVEHFVRFEASQYEYLTTENVYLAVIPMFHIYGLSFFVMGLLSLGSSVVVLRKFDIKEVVKAIDRFKVTHFPVVPPILTALAKAAQKVGVHRFQSLKQVSCGAATLIKKTRDDFLQALPHVDFIQGYGMTESTAVGTRGFNTKKAQKYSSVGLLAPNMEAKVVDWVSGSFMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDEENWLHTGDIVYFDQEGYLYVVDRLKEVIKYKGFQIAPSDIEAVVTTHPEVVDVAVTAAIDEECGEIPVAFVIKKPGSKLSQKDVIDFVAQQVAPYKKVRKVVFTEVIPKSAAGKVLRRELKNRLSSKL | 576 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 40805916 | 40810323 | - | Lag0033100.1 | Lac11g2462 | 588320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2462 | 576 | Gene3D | - | 474 | 575 | IPR045851 | - | |
Lac11g2462 | 576 | Pfam | AMP-binding enzyme | 70 | 436 | IPR000873 | - | |
Lac11g2462 | 576 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lac11g2462 | 576 | Gene3D | - | 48 | 473 | IPR042099 | - | |
Lac11g2462 | 576 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 37 | 569 | - | GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER) | |
Lac11g2462 | 576 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
Lac11g2462 | 576 | FunFam | Long-chain-fatty-acid--CoA ligase FadD | 49 | 473 | - | - | |
Lac11g2462 | 576 | SUPERFAMILY | Acetyl-CoA synthetase-like | 69 | 572 | - | - | |
Lac11g2462 | 576 | CDD | 4CL | 53 | 568 | - | - | |
Lac11g2462 | 576 | Pfam | AMP-binding enzyme C-terminal domain | 488 | 562 | IPR025110 | - | |
Lac11g2462 | 576 | ProSitePatterns | Putative AMP-binding domain signature. | 223 | 234 | IPR020845 | - | |
Lac11g2462 | 576 | FunFam | 4-coumarate--CoA ligase 2 | 474 | 575 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2462 | Lac-Chr11:40805916 | Lac2g0105 | Lac-Chr2:785034 | 1.60E-119 | dispersed | |
Lac11g2462 | Lac-Chr11:40805916 | Lac11g0573 | Lac-Chr11:5816331 | 2.60E-93 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2462 | K01904 | - | csv:101219578 | 892.108 |