Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2471 ATGTCGCTCCTCAGTAGATTCTTTTACAGAAGGCCCCCGGATGGGTTGCTGGAGTTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCATGAAATCGTAAATGAATTACATGAAGAATTCCCAGACTCGTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAAGGAGCCAATTTTCAGAAATGTTGTGTGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCTCTTCTTCCACTGTCCTTAATACAGCACTTCCTTCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCCAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGCTTTTGCAGCTCTTGTCACCATTAAATCCATTCCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACACAGATGATTTTCTCCATGCCCAAGAAGAACAAAGCCTTACGTCACTACCGTCAGGCAGAATGTGATGTGATCAAAATAGACGTCCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTCGATCAAACATACTTATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTATTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAAGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAACAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGACTGACGTGAAAGAATTGTCGAGACTGCAAAATAAAACAAGTTCATACTCTTCGCCAGCGGATTCTGAAGAGGAAAATAATACTTCCAGCACAGCCGATAGTTCAGATGAAGTATTTGATAGTATGACAAAGCCTTTAGTTGATTCAACTTCTACCAATTTTACAATTCCAGCTATGGTACATTCTTCTGAATTATTGTCTGACAAGAGTGGTGCTAATGAAGTGAATATTTCATCAGAATCTCCTCAAACTTTTGATGAATGTGAAGACAAGATCTGTTCGATTAAAGAATCTCATCAACCCTCTTCATCACCTCCACTAACTTCTTTTGTCTCCCCACCCTCTCCTATAAGTTCTTTAATGCCATCACCATTGTTGCCTCCATCTAATCTACCATCTACTAATGCTAGTGGGGAACTTGTCTCAAATAAAATAACACCTATGGTTAAAGTGATTCCTCCACCGCCACCGCCGCCGCCACCTTTTTCTCTATCTCATAAGGAACCTCATGTAGAAACTTCCATGAGTTCAGACTTGACTTCTGTAACAATGCATGGGAGATCCCCTCCACCCCCTCCACCTCCACCTCTTATTAGCAACAATCCTGTTACGACCTCTTTGACTCCTTCACTTTTGATGATTCCTAAATCTTCTAGTCCTCCTCCACCCCCACCTCCACCTCCCCTCCCAAAAATAGGTGGTGTTCCACCTCCACCTCCACCTCCTATTCCAAAATCTTTTGGTGCTCCTCCACCTCCACCTCCTCCTCCTCCTTTTATTCCACAATCTTCTAGTGTTCCTCCACCTCCACCTCCAGTGCCAAAATCTTCTGGTGCTCCTCCACCTCCGCCTTCGGTTCCCAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCCTCCTCCCCCTCCTCCACCTCCTATTTCAAAGTCTTCTAGTGCTCTCCCACCTCCACCTCCACCTCCGCCTCCTATTCCAAAATTTTCTGGTGCTCCTCCACCTCCTCCTCCACCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCACCTCCACCTCCTTTGCCACAATCAAATCGTGGTGCGACACCAATTCCACCTCCTCCCCCACCTAAACCTCCCGGCGGTGAGCTACCAAGTCATGGTACTAAATCAATTAGGCCTCCTCCACCCCCTCCACCAGCAAAGCCCTTCAATGCTCATCCTCCAACAAGTCATAGTGCTACACCAATGCCACCCCCTCCCCTGGATCAAGAGGCTAGAGGTCGAGTTGCTACAGGAGTTGGAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGGCGTGGTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACATTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTTGAGCTAATGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAAAGATTTGAGATATAATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCATTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCGGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTGGAAGGTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAACGACGGTGCTATCTCCGTTGGGTTCCAAAAGGTGCTGAAGAATTTTCTCGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGTTGTCTCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTGTTTGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTGAAAGCGAAATGTGAATATCAGATGTGTGATTTCATGGACTTCCATCAAGCTGAACATGAGGCAGTTTTGTTCCCAGGTTGGCTCTTCGCCTTCCTAGTTCGTGCATTGCCATCTCTTTCACCGATATCGTGCTCTGTAAATACGCTGTGA 3849 43.65 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIVNELHEEFPDSSFLAFNFREGEKRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQAECDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEIESISPPKAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALTDVKELSRLQNKTSSYSSPADSEEENNTSSTADSSDEVFDSMTKPLVDSTSTNFTIPAMVHSSELLSDKSGANEVNISSESPQTFDECEDKICSIKESHQPSSSPPLTSFVSPPSPISSLMPSPLLPPSNLPSTNASGELVSNKITPMVKVIPPPPPPPPPFSLSHKEPHVETSMSSDLTSVTMHGRSPPPPPPPPLISNNPVTTSLTPSLLMIPKSSSPPPPPPPPPLPKIGGVPPPPPPPIPKSFGAPPPPPPPPPFIPQSSSVPPPPPPVPKSSGAPPPPPSVPKSFGAPPPPPPPPPPPPKSSSAPPPPPPPPISKSSSALPPPPPPPPPIPKFSGAPPPPPPPPISKSSSAPPPPPPLPQSNRGATPIPPPPPPKPPGGELPSHGTKSIRPPPPPPPAKPFNAHPPTSHSATPMPPPPLDQEARGRVATGVGNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVKDLRYNLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEGASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAKCEYQMCDFMDFHQAEHEAVLFPGWLFAFLVRALPSLSPISCSVNTL 1282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40930121 40940673 + Lag0033109.1 Lac11g2471 588329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2471 1282 Coils Coil 1111 1138 - -
Lac11g2471 1282 SMART it6_source 549 1276 IPR015425 -
Lac11g2471 1282 Gene3D - 197 342 - -
Lac11g2471 1282 Gene3D Formin, FH2 domain 832 1216 IPR042201 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 883 903 - -
Lac11g2471 1282 FunFam Formin-like protein 830 1216 - -
Lac11g2471 1282 Pfam Formin Homology 2 Domain 835 1205 IPR015425 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 502 524 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 883 897 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 581 595 - -
Lac11g2471 1282 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 405 433 - -
Lac11g2471 1282 PANTHER FORMIN-J 728 1228 IPR051144 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 787 820 - -
Lac11g2471 1282 Coils Coil 1205 1228 - -
Lac11g2471 1282 ProSiteProfiles Formin homology-2 (FH2) domain profile. 830 1230 IPR015425 -
Lac11g2471 1282 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 492 824 - -
Lac11g2471 1282 SMART PTEN_C2_2 198 338 IPR014020 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 610 780 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 544 560 - -
Lac11g2471 1282 SUPERFAMILY Formin homology 2 domain (FH2 domain) 905 1230 - -
Lac11g2471 1282 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lac11g2471 1282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
Lac11g2471 1282 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2471 Lac-Chr11:40930121 Lac3g0209 Lac-Chr3:1483722 7.60E-255 dispersed
Lac11g2471 Lac-Chr11:40930121 Lac2g0546 Lac-Chr2:4064488 4.30E-258 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2471 K28090 - csv:101217517 1002.28