Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2471 ATGTCGCTCCTCAGTAGATTCTTTTACAGAAGGCCCCCGGATGGGTTGCTGGAGTTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCATGAAATCGTAAATGAATTACATGAAGAATTCCCAGACTCGTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAAGGAGCCAATTTTCAGAAATGTTGTGTGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCTCTTCTTCCACTGTCCTTAATACAGCACTTCCTTCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCCAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGCTTTTGCAGCTCTTGTCACCATTAAATCCATTCCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACACAGATGATTTTCTCCATGCCCAAGAAGAACAAAGCCTTACGTCACTACCGTCAGGCAGAATGTGATGTGATCAAAATAGACGTCCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTCGATCAAACATACTTATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTATTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAAGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAACAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGACTGACGTGAAAGAATTGTCGAGACTGCAAAATAAAACAAGTTCATACTCTTCGCCAGCGGATTCTGAAGAGGAAAATAATACTTCCAGCACAGCCGATAGTTCAGATGAAGTATTTGATAGTATGACAAAGCCTTTAGTTGATTCAACTTCTACCAATTTTACAATTCCAGCTATGGTACATTCTTCTGAATTATTGTCTGACAAGAGTGGTGCTAATGAAGTGAATATTTCATCAGAATCTCCTCAAACTTTTGATGAATGTGAAGACAAGATCTGTTCGATTAAAGAATCTCATCAACCCTCTTCATCACCTCCACTAACTTCTTTTGTCTCCCCACCCTCTCCTATAAGTTCTTTAATGCCATCACCATTGTTGCCTCCATCTAATCTACCATCTACTAATGCTAGTGGGGAACTTGTCTCAAATAAAATAACACCTATGGTTAAAGTGATTCCTCCACCGCCACCGCCGCCGCCACCTTTTTCTCTATCTCATAAGGAACCTCATGTAGAAACTTCCATGAGTTCAGACTTGACTTCTGTAACAATGCATGGGAGATCCCCTCCACCCCCTCCACCTCCACCTCTTATTAGCAACAATCCTGTTACGACCTCTTTGACTCCTTCACTTTTGATGATTCCTAAATCTTCTAGTCCTCCTCCACCCCCACCTCCACCTCCCCTCCCAAAAATAGGTGGTGTTCCACCTCCACCTCCACCTCCTATTCCAAAATCTTTTGGTGCTCCTCCACCTCCACCTCCTCCTCCTCCTTTTATTCCACAATCTTCTAGTGTTCCTCCACCTCCACCTCCAGTGCCAAAATCTTCTGGTGCTCCTCCACCTCCGCCTTCGGTTCCCAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCCTCCTCCCCCTCCTCCACCTCCTATTTCAAAGTCTTCTAGTGCTCTCCCACCTCCACCTCCACCTCCGCCTCCTATTCCAAAATTTTCTGGTGCTCCTCCACCTCCTCCTCCACCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCACCTCCACCTCCTTTGCCACAATCAAATCGTGGTGCGACACCAATTCCACCTCCTCCCCCACCTAAACCTCCCGGCGGTGAGCTACCAAGTCATGGTACTAAATCAATTAGGCCTCCTCCACCCCCTCCACCAGCAAAGCCCTTCAATGCTCATCCTCCAACAAGTCATAGTGCTACACCAATGCCACCCCCTCCCCTGGATCAAGAGGCTAGAGGTCGAGTTGCTACAGGAGTTGGAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGGCGTGGTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACATTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTTGAGCTAATGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAAAGATTTGAGATATAATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCATTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCGGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTGGAAGGTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAACGACGGTGCTATCTCCGTTGGGTTCCAAAAGGTGCTGAAGAATTTTCTCGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGTTGTCTCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTGTTTGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTGAAAGCGAAATGTGAATATCAGATGTGTGATTTCATGGACTTCCATCAAGCTGAACATGAGGCAGTTTTGTTCCCAGGTTGGCTCTTCGCCTTCCTAGTTCGTGCATTGCCATCTCTTTCACCGATATCGTGCTCTGTAAATACGCTGTGA 3849 43.65 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIVNELHEEFPDSSFLAFNFREGEKRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQAECDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEIESISPPKAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALTDVKELSRLQNKTSSYSSPADSEEENNTSSTADSSDEVFDSMTKPLVDSTSTNFTIPAMVHSSELLSDKSGANEVNISSESPQTFDECEDKICSIKESHQPSSSPPLTSFVSPPSPISSLMPSPLLPPSNLPSTNASGELVSNKITPMVKVIPPPPPPPPPFSLSHKEPHVETSMSSDLTSVTMHGRSPPPPPPPPLISNNPVTTSLTPSLLMIPKSSSPPPPPPPPPLPKIGGVPPPPPPPIPKSFGAPPPPPPPPPFIPQSSSVPPPPPPVPKSSGAPPPPPSVPKSFGAPPPPPPPPPPPPKSSSAPPPPPPPPISKSSSALPPPPPPPPPIPKFSGAPPPPPPPPISKSSSAPPPPPPLPQSNRGATPIPPPPPPKPPGGELPSHGTKSIRPPPPPPPAKPFNAHPPTSHSATPMPPPPLDQEARGRVATGVGNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVKDLRYNLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEGASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAKCEYQMCDFMDFHQAEHEAVLFPGWLFAFLVRALPSLSPISCSVNTL 1282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 40930121 40940673 + Lag0033109.1 Lac11g2471 588329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2471 1282 Coils Coil 1111 1138 - -
Lac11g2471 1282 SMART it6_source 549 1276 IPR015425 -
Lac11g2471 1282 Gene3D - 197 342 - -
Lac11g2471 1282 Gene3D Formin, FH2 domain 832 1216 IPR042201 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 883 903 - -
Lac11g2471 1282 FunFam Formin-like protein 830 1216 - -
Lac11g2471 1282 Pfam Formin Homology 2 Domain 835 1205 IPR015425 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 502 524 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 883 897 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 581 595 - -
Lac11g2471 1282 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 405 433 - -
Lac11g2471 1282 PANTHER FORMIN-J 728 1228 IPR051144 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 787 820 - -
Lac11g2471 1282 Coils Coil 1205 1228 - -
Lac11g2471 1282 ProSiteProfiles Formin homology-2 (FH2) domain profile. 830 1230 IPR015425 -
Lac11g2471 1282 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 492 824 - -
Lac11g2471 1282 SMART PTEN_C2_2 198 338 IPR014020 -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 610 780 - -
Lac11g2471 1282 MobiDBLite consensus disorder prediction 544 560 - -
Lac11g2471 1282 SUPERFAMILY Formin homology 2 domain (FH2 domain) 905 1230 - -
Lac11g2471 1282 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lac11g2471 1282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
Lac11g2471 1282 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2471 K28090 - - csv:101217517 1002.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2471 Lac-Chr11:40930121 Lac3g0209 Lac-Chr3:1483722 7.60E-255 dispersed
Lac11g2471 Lac-Chr11:40930121 Lac2g0546 Lac-Chr2:4064488 4.30E-258 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1726 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 4.6e-165 579.7
Lac9g1078 . 458 881 FH2 protein (formin) Gene Family AT3G25500 63.7 1.9e-142 504.6
Lac3g2794 . 493 894 FH2 protein (formin) Gene Family AT3G25500 51.2 2.0e-104 378.3
Lac11g2477 . 616 1074 FH2 protein (formin) Gene Family AT2G43800 60.5 1.0e-144 511.9
Lac9g1078 . 458 893 FH2 protein (formin) Gene Family AT2G43800 55.0 1.3e-123 441.8
Lac9g2080 . 291 645 FH2 protein (formin) Gene Family AT4G15200 52.4 3.8e-55 213.4
Lac2g1354 . 454 603 FH2 protein (formin) Gene Family AT4G15200 64.9 2.3e-47 187.6
Lac2g1354 . 458 905 FH2 protein (formin) Gene Family AT5G54650 67.5 2.5e-167 587.0
Lac9g2080 . 507 969 FH2 protein (formin) Gene Family AT5G54650 62.7 1.5e-159 561.2
Lac11g2477 . 627 1029 FH2 protein (formin) Gene Family AT5G54650 50.5 3.3e-103 374.0
Lac9g1078 . 8 900 FH2 protein (formin) Gene Family AT5G67470 57.6 9.5e-236 814.3
Lac11g2477 . 608 1072 FH2 protein (formin) Gene Family AT5G67470 58.8 1.2e-134 478.4
Lac13g1726 . 491 926 FH2 protein (formin) Gene Family AT5G67470 62.2 3.4e-132 470.3
Lac3g2794 . 491 896 FH2 protein (formin) Gene Family AT5G67470 51.0 7.8e-105 379.4
Lac13g0243 . 347 826 FH2 protein (formin) Gene Family AT1G59910 51.3 2.7e-124 444.1
Lac9g1078 . 482 858 FH2 protein (formin) Gene Family AT5G48360 50.1 4.7e-90 330.1
Lac2g1354 . 466 877 FH2 protein (formin) Gene Family AT3G05470 51.0 5.3e-106 383.3
Lac9g1078 . 462 857 FH2 protein (formin) Gene Family AT3G05470 51.2 7.7e-105 379.4
Lac11g2471 . 916 1227 FH2 protein (formin) Gene Family AT1G42980 50.5 7.4e-68 255.0
Lac11g2471 . 1 1234 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1222.2
Lac3g0591 . 1369 1690 FH2 protein (formin) Gene Family AT5G07650 73.9 2.0e-128 457.6
Lac10g0118 . 982 1270 FH2 protein (formin) Gene Family AT5G07650 70.2 1.4e-110 398.3
Lac2g0546 . 1072 1400 FH2 protein (formin) Gene Family AT5G07650 62.9 8.7e-108 389.0
Lac3g0209 . 935 1253 FH2 protein (formin) Gene Family AT5G07650 62.2 1.1e-107 388.7
Lac11g2471 . 900 1231 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lac3g0591 . 1296 1680 FH2 protein (formin) Gene Family AT5G07770 69.7 3.4e-141 499.6
Lac10g0118 . 903 1270 FH2 protein (formin) Gene Family AT5G07770 63.4 5.6e-120 429.1
Lac3g0209 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 1.1e-115 414.8
Lac2g0546 . 996 1392 FH2 protein (formin) Gene Family AT5G07770 57.3 1.9e-115 414.1
Lac11g2471 . 836 1225 FH2 protein (formin) Gene Family AT5G07770 55.8 5.5e-115 412.5
Lac2g0546 . 988 1400 FH2 protein (formin) Gene Family AT3G32400 75.8 7.2e-169 591.3
Lac3g0209 . 842 1255 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-147 519.6
Lac11g2471 . 836 1230 FH2 protein (formin) Gene Family AT3G32400 66.0 3.7e-141 499.2
Lac3g0591 . 1296 1690 FH2 protein (formin) Gene Family AT3G32400 65.5 4.9e-141 498.8
Lac10g0118 . 875 1263 FH2 protein (formin) Gene Family AT3G32400 59.2 2.7e-123 439.9
Lac2g0546 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 50.4 0.0e+00 1156.7
Lac3g0209 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 51.9 6.4e-293 1004.6
Lac3g0591 . 1297 1690 FH2 protein (formin) Gene Family AT5G07780 63.0 5.1e-124 442.2
Lac10g0118 . 906 1270 FH2 protein (formin) Gene Family AT5G07780 56.4 1.1e-102 371.3
Lac11g2471 . 837 1226 FH2 protein (formin) Gene Family AT5G07780 52.7 5.5e-102 369.0
Lac2g0546 . 997 1393 FH2 protein (formin) Gene Family AT5G07780 53.2 2.7e-101 366.7
Lac3g0209 . 865 1246 FH2 protein (formin) Gene Family AT5G07780 53.8 7.9e-101 365.2
Lac3g0591 . 1 1699 FH2 protein (formin) Gene Family AT5G07740 63.7 0.0e+00 1115.1
Lac3g0591 . 1368 1697 FH2 protein (formin) Gene Family AT5G07760 73.5 9.2e-127 452.2
Lac10g0118 . 981 1270 FH2 protein (formin) Gene Family AT5G07760 70.7 1.7e-109 394.8
Lac3g0209 . 934 1253 FH2 protein (formin) Gene Family AT5G07760 64.2 8.6e-109 392.5
Lac2g0546 . 1071 1408 FH2 protein (formin) Gene Family AT5G07760 62.9 4.3e-108 390.2
Lac11g2471 . 910 1231 FH2 protein (formin) Gene Family AT5G07760 61.3 3.1e-106 384.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32