Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2492 | ATGGGGCCGGGCATGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGGAACCACTATTTTCAGAAGGGTCGAATTGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTCTGCCCTAATGTTCCTGTTTATTTGACCAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTTGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATCGCAATTCTGTTAAGGCACATTATATGTTAGGACTAGCATTAATACAAAATAAAGAATATCCAGAAGGAATCAGGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGGGAGTGGGAACAAGCATCTACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTCGAAGGGTTCGTAGATGAAGCCAGAATTGCTCATCGGAAACAATTAAATTCTCTTAGAAGTGTGTTTGAAAAAGTTGGAGAGGCGGATGCGCCGTCTGAGGTGCCTGATTATCTCTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTTATTACTCCAAGTGGAGTTACGTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTGGGTAACTTTGATCCCATAACAAGGGAGCTGCTCAATGAGTCACAGCTAGTACCAAACTTAGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATGGATGGGCTTATAATACTGATTAA | 846 | 44.33 | MGPGMALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDRNSVKAHYMLGLALIQNKEYPEGIRHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEQASTKRSWELQTLKEACEAALEQKYFLDQSELEGFVDEARIAHRKQLNSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLNESQLVPNLAIKEAVQAFLDKHGWAYNTD | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41118821 | 41122983 | - | Lag0033130.1 | Lac11g2492 | 588350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2492 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac11g2492 | 281 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
Lac11g2492 | 281 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 50 | 108 | - | - | |
Lac11g2492 | 281 | SUPERFAMILY | TPR-like | 8 | 135 | IPR011990 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac11g2492 | 281 | SUPERFAMILY | RING/U-box | 198 | 278 | - | - | |
Lac11g2492 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 8 | 279 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) | |
Lac11g2492 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
Lac11g2492 | 281 | ProSiteProfiles | TPR repeat profile. | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | Gene3D | Tetratricopeptide repeat domain | 8 | 144 | IPR011990 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | Pfam | Tetratricopeptide repeat | 24 | 46 | IPR019734 | GO:0005515(InterPro) | |
Lac11g2492 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2492 | Lac-Chr11:41118821 | Lac12g1721 | Lac-Chr12:33040793 | 2.00E-06 | dispersed | |
Lac11g2492 | Lac-Chr11:41118821 | Lac10g2755 | Lac-Chr10:42047698 | 1.50E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2492 | K09561 | - | csv:101215457 | 538.11 |