Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2510 ATGGGTGGTGGCCGCACTTTGTACACTTTGGCTGAGGTTGCCTCCCACGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACGATTCCTGCAAAAAGAAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACCCCAGAATTCATTATCAAGGTCCTCCAGGTTCTTGCTCCCCTGGAGATGAGACTGAATAAACTTCCGAGCATGTTCGCTTCGCTTGCACACTTGCACCTGTTATTTGTCTTCCCCATCCTGAACCCGAAAACTGCTTTAGACTGTCGAAATTTAGATAGAGTGATTGCATAA 483 47.0 MGGGRTLYTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPAKRKYTPPKQPLYNQDKTPEFIIKVLQVLAPLEMRLNKLPSMFASLAHLHLLFVFPILNPKTALDCRNLDRVIA 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41219714 41223030 + Lag0033148.1 Lac11g2510 588368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2510 160 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Lac11g2510 160 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lac11g2510 160 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lac11g2510 160 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lac11g2510 160 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lac11g2510 160 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lac11g2510 160 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lac11g2510 160 FunFam Cytochrome b5 type B 4 85 - -
Lac11g2510 160 Gene3D - 4 86 IPR036400 -
Lac11g2510 160 PANTHER CYTOCHROME B5 6 110 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lac11g2510 160 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lac11g2510 160 SMART Cyt_b5_2 8 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2510 K23490 - - csv:101212882 228.794
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2510 Lac-Chr11:41219714 Lac4g0070 Lac-Chr4:1259308 4.30E-38 dispersed
Lac11g2510 Lac-Chr11:41219714 Lac12g2057 Lac-Chr12:37681232 3.40E-43 wgd
Lac11g2510 Lac-Chr11:41219714 Lac7g0465 Lac-Chr7:3688907 1.20E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156