Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2537 | ATGGCGGTTTCTTCTCTTAGAGTATTACGGTTTTCATCGGCTTCTTCGTTGCTCTTCCTTCTTCTCAACGTCCTCTTCGTTCATTCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACGGGTATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGGATCCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCCTGCGGGACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACCCGCGTTGGCAACTTCGCCGAAAGCACTTGGCAGATTGCGGCATTGGGTTTGGTCGTAATGCTGTCGGTGGCCGTGATGGGCGATACTACGTCGTCTCTGATCCCGGCGACGATGACCCTGTCAATCCCAGACCAGGCACTCTTCGTCATGCTGTGATTCAAGACAGGCCACTGTGGATTGTGTTCAAAAGAGACATGGTCATCACTCTGAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCCCGTGGTGCCAATGTCCACATTGCTTATGGGGCTTGCATTACAATCCAATTCATTACCAATGTCATTATTCATGGCCTGCACATTCATGACTGCAAGCCAACTGGGAACGCCATGGTTCGAAGCTCCCCTAGCCACTATGGATGGAGGACAATGGCTGATGGCGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCTACTGCCATCACCATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTTTTGGGACATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCTACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAATGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTCTGCTAAATGGAGCCTATTTCACTCCATCAGGTGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTGGGAGCCAAATCCTCTTCCTTGGTGGGCTCCATTACTTCAAGTGCAGGTGCCCTTTCTTGTCGTAGGGGATACCGTTGTTAA | 1311 | 47.44 | MAVSSLRVLRFSSASSLLFLLLNVLFVHSSFAGDERLQSFNSSSMADGYVKNEHAVDNPEEIASMVDLRIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGVWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSSAGALSCRRGYRC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41447143 | 41452011 | + | Lag0033175.1 | Lac11g2537 | 588395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2537 | 436 | Gene3D | - | 87 | 429 | IPR012334 | - | |
Lac11g2537 | 436 | FunFam | Pectate lyase | 87 | 429 | - | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Lac11g2537 | 436 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Lac11g2537 | 436 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Lac11g2537 | 436 | Pfam | Pectate lyase | 182 | 351 | IPR002022 | - | |
Lac11g2537 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 27 | 433 | IPR045032 | GO:0030570(InterPro) | |
Lac11g2537 | 436 | SUPERFAMILY | Pectin lyase-like | 65 | 431 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2537 | Lac-Chr11:41447143 | Lac6g0705 | Lac-Chr6:5993368 | 1.60E-172 | dispersed | |
Lac8g2540 | Lac-Chr8:43165558 | Lac11g2537 | Lac-Chr11:41447143 | 8.30E-171 | transposed | |
Lac11g2537 | Lac-Chr11:41447143 | Lac12g2078 | Lac-Chr12:37893849 | 1.30E-201 | wgd | |
Lac11g2537 | Lac-Chr11:41447143 | Lac7g0490 | Lac-Chr7:3919748 | 6.70E-203 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2537 | K01728 | - | csv:101207204 | 822.387 |