Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2537 ATGGCGGTTTCTTCTCTTAGAGTATTACGGTTTTCATCGGCTTCTTCGTTGCTCTTCCTTCTTCTCAACGTCCTCTTCGTTCATTCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACGGGTATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGGATCCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCCTGCGGGACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACCCGCGTTGGCAACTTCGCCGAAAGCACTTGGCAGATTGCGGCATTGGGTTTGGTCGTAATGCTGTCGGTGGCCGTGATGGGCGATACTACGTCGTCTCTGATCCCGGCGACGATGACCCTGTCAATCCCAGACCAGGCACTCTTCGTCATGCTGTGATTCAAGACAGGCCACTGTGGATTGTGTTCAAAAGAGACATGGTCATCACTCTGAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCCCGTGGTGCCAATGTCCACATTGCTTATGGGGCTTGCATTACAATCCAATTCATTACCAATGTCATTATTCATGGCCTGCACATTCATGACTGCAAGCCAACTGGGAACGCCATGGTTCGAAGCTCCCCTAGCCACTATGGATGGAGGACAATGGCTGATGGCGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCTACTGCCATCACCATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTTTTGGGACATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCTACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAATGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTCTGCTAAATGGAGCCTATTTCACTCCATCAGGTGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTGGGAGCCAAATCCTCTTCCTTGGTGGGCTCCATTACTTCAAGTGCAGGTGCCCTTTCTTGTCGTAGGGGATACCGTTGTTAA 1311 47.44 MAVSSLRVLRFSSASSLLFLLLNVLFVHSSFAGDERLQSFNSSSMADGYVKNEHAVDNPEEIASMVDLRIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGVWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSSAGALSCRRGYRC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41447143 41452011 + Lag0033175.1 Lac11g2537 588395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2537 436 Gene3D - 87 429 IPR012334 -
Lac11g2537 436 FunFam Pectate lyase 87 429 - -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Lac11g2537 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Lac11g2537 436 SMART amb_all 162 359 IPR002022 -
Lac11g2537 436 Pfam Pectate lyase 182 351 IPR002022 -
Lac11g2537 436 PANTHER PECTATE LYASE 18-RELATED 27 433 IPR045032 GO:0030570(InterPro)
Lac11g2537 436 SUPERFAMILY Pectin lyase-like 65 431 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2537 Lac-Chr11:41447143 Lac6g0705 Lac-Chr6:5993368 1.60E-172 dispersed
Lac8g2540 Lac-Chr8:43165558 Lac11g2537 Lac-Chr11:41447143 8.30E-171 transposed
Lac11g2537 Lac-Chr11:41447143 Lac12g2078 Lac-Chr12:37893849 1.30E-201 wgd
Lac11g2537 Lac-Chr11:41447143 Lac7g0490 Lac-Chr7:3919748 6.70E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2537 K01728 - csv:101207204 822.387