Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2562 ATGCATTTCTCGATTATGCACCTTCTTCTGGTTCTTCATGCGGTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGCACATATATACTTATCTCCTTCCTTACAGCCAAACCTGGAAACAACACTGACAGAAATGTCAACAGAACATGCAAGGTCAGAATCGATGAGTTTTTCATTTGTGCCTTCAAAGTTACATGGTAACTGGATGTTTAAGTCTTCTTCAGGACCATCCCCTGCTCCTGCACCTTCTCCAGGTCTTAGGGGTGCACCCTTACCTATCCGACATCATCGACGGCGTCGTATACGACCTCATGTAGTTGCTCCTACCCCATCAAAAGATCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCGGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCGTATGCTGTTTTTCCTGTGATGAACGAGCTTGAAATTGAGATTGCAGAGGGGACTTACTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAAGTGCAGATAGTCAAAATCAAGGAAGAACTATGGTGGATATAAATTTAGTGCCTCTAGGTGAGAAGTTTGATAATACCACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAGAAAGTGCATCTAAATATGACTCTTTTTGGTGACTATGAAGTTGTCTCCATCAGCTATCCAGGGATTCCTTCTTCACCGCCATATGGAGGATACATGGGAAGTGCTCCGAGTGGAAGTACTGGAGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTTTCCATCTTTTTAAATGGAGAAAGGTTGGCAGACCGTCTAGTGCAGTTGGTCCCATCTTCACGTCATCAATTAATAAAAGATCTGGTGAGTCTAGGATCTGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACAAGTATTCAATCTGTTAAAACATTTGCACTTTCAGAACTTGAGAAAGCTACAGATAAGTTTAGTTCAAAAAGGATATTAGGTGAAGGGGGATTTGGCCGCGTTTACTGTGGTCTTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGGGATAATCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCACCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCCCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTGGATTGGGATGCACGGTTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGTGTAATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCTAAGGTTTCGGATTTCGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACGAGGGTCATGGGAACTTTCGGGTATGTAGCCCCTGAATATGCAATGACAGGGCACCTACTCGTCAAAAGCGATGTTTACAGCTATGGAGTCGTGCTACTTGAGCTTCTTTCAGGAAGAAAACCAGTGGACATGTCCCAGCCACATGGTGAGGAGAACCTTGTAACATGGGCTCGGCCTCTACTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCCTCTCTTGCCGGCAGTTACGACTTCGACGACATGGCCAAGGTGGCAGCCATTGCTTCTATGTGCGTTCATCCGGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAGCTGATATACAATGACACAGATGAGACATGTGCAGACTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCAGATTTCAAAGGCGATCTTGTGCCATCAGATAGCAGTTGGTGGAATGCCGGTGGCCTTACGCCTCGACTGACATACGGTCAAGCCTCCTCCTTCATCACCATGGAATACAGCTCTGGCCCCCTTGAAGAAATGGAAAACCGACCGTTTTCAACTTCAAGTTTGATAGGGGACGAGATATCTTTGCCCATTCGGCATGGAAACAGGTCAGGTCCCTTACGAACCGCTCGAAGCAAGCCTGCCTTCTACAGATTTTCGGGAAGTCGGAGTGAGCACGGAGGACTTCTTTCAAGGCCTTCTTGGAACAGTGGGTTTTGGGTTTGA 2322 45.26 MHFSIMHLLLVLHAVDLLFSCSGQSSAHIYLSPSLQPNLETTLTEMSTEHARSESMSFSFVPSKLHGNWMFKSSSGPSPAPAPSPGLRGAPLPIRHHRRRRIRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELEIEIAEGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVSISYPGIPSSPPYGGYMGSAPSGSTGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFLNGERLADRLVQLVPSSRHQLIKDLVSLGSALSSSIASSTSVSLISTMPTSIQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGLLEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGLLSRPSWNSGFWV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41686795 41692048 - Lag0033200.1 Lac11g2562 588420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2562 773 Gene3D Transferase(Phosphotransferase) domain 1 446 669 - -
Lac11g2562 773 FunFam receptor-like serine/threonine-protein kinase ALE2 343 445 - -
Lac11g2562 773 ProSiteProfiles Protein kinase domain profile. 370 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2562 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g2562 773 MobiDBLite consensus disorder prediction 72 101 - -
Lac11g2562 773 PANTHER OS01G0750732 PROTEIN 119 667 IPR050885 -
Lac11g2562 773 FunFam Receptor-like serine/threonine-protein kinase ALE2 446 663 - -
Lac11g2562 773 Pfam Protein tyrosine and serine/threonine kinase 373 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g2562 773 SUPERFAMILY Protein kinase-like (PK-like) 348 645 IPR011009 -
Lac11g2562 773 CDD STKc_IRAK 376 645 - -
Lac11g2562 773 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524(InterPro)
Lac11g2562 773 Gene3D Phosphorylase Kinase; domain 1 342 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0417 Lac-Chr11:4249214 Lac11g2562 Lac-Chr11:41686795 1.10E-106 dispersed
Lac11g2562 Lac-Chr11:41686795 Lac4g2984 Lac-Chr4:48097144 4.90E-172 dispersed
Lac7g1172 Lac-Chr7:10801545 Lac11g2562 Lac-Chr11:41686795 6.70E-72 dispersed
Lac7g1601 Lac-Chr7:18798082 Lac11g2562 Lac-Chr11:41686795 2.10E-74 dispersed
Lac11g2562 Lac-Chr11:41686795 Lac3g1027 Lac-Chr3:8360370 2.70E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85769 PF07714 PK_Tyr_Ser-Thr 2.80E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2562 - - - 0.0