Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2567 ATGGCAGAAATGGCCTGCTCCGCTGCCGACCTCCGCCACCTCCTCGGCGACTCAGCCAACGCCACGGCCATCGCCGAATACATTTGCGGCCGATTCGAAGCCGTTTCGACCAAGTTTGTTGACACAAGTTACGCTGTTGACAACACTTACCTTCTGTTTTCAGCCTACCTTGTGTTTGCAATGCAGCTGGGATTTGCAATGCTCTGTGCTGGTTCTGTTAGAGCCAAAAACACAATGAACATTATGCTCACCAATGTTCTTGATGCTGCCACTGGTGGCATTTTTTATTATGTGTTTGGCTTTGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGACACCATTATTTTGGCCTCTCGCAGTTTCCTTCTTCTTCGTTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTTGCCATTGCTGCTGCTGGGATTACCAGTGGATCCATTGCTGAACGAACCCAGTTTGTTGCCTATTTGATCTATTCCTCTGTCTTGACTGGTTTGGTTTATCCAATCGTCTCTCATTGGTTTTGGTCTTCCGACGGGTGGGGTAGCGCCGCTCGGTCGGAGAATCTCCTATTTGGCTCGGGAGTGATCGACTTCGCCGGCTCCGGCGTGGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCGTCATAGAAGGCCCTCGAATCGGCCGGTTCGACCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACGCTAGTCGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCACCACCGCCGCCGCCCCCTTTTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACCACCCTCGCCGGCTGCACGGCGGCGCTCACGACCCTCTTCGGCAAACGCCTCCTCGTCGGCCACTGGAACGTCACCGACGTCTGCAACGGCCTATTGGGCGGATTCGCCGCCATAACTTCCGGCTGCGCGGTGGTGGATCCATGGGCGGCGATCGTTTGCGGGTTCTTCGCCGCCTGGGTTTTGATCGGATTCAACAAACTGGCGCAGAAATTGAAGTACGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGCTGTGGGGCTTGGGGGATTTTGTTCACAGGCTTGTTCGCAAAACAGGCTTATGTTAACGAGATTTATCCGGGGTTGCCGGTGAGGCCGTACGGGCTGCTGATGGGCGGCGGCGGGAGGCTGCTGGCGGCTCATATGGTGCAAATTTTGTCGATTGTTGGTTGGGTTAGTTTGACAATGGGGTTGGTTTTTTGGCTGTTGCATAAGTTTCGGTTGCTGAGGATCACGGCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGCGGCTTGGCTTATGTGTATAATGACGAAGATAAGCCTGAATTTCCTTGA 1458 55.69 MAEMACSAADLRHLLGDSANATAIAEYICGRFEAVSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTAAAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAQKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPVRPYGLLMGGGGRLLAAHMVQILSIVGWVSLTMGLVFWLLHKFRLLRITAEEEMAGMDLTSHGGLAYVYNDEDKPEFP 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41730680 41733254 - Lag0033205.1 Lac11g2567 588425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2567 485 SUPERFAMILY Ammonium transporter 44 455 - -
Lac11g2567 485 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac11g2567 485 Gene3D Ammonium transporter AmtB like domains 29 483 IPR029020 -
Lac11g2567 485 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac11g2567 485 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac11g2567 485 FunFam Ammonium transporter 28 484 - -
Lac11g2567 485 PANTHER AMMONIUM TRANSPORTER 31 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1894 Lac-Chr6:32513523 Lac11g2567 Lac-Chr11:41730680 6.80E-207 transposed
Lac11g2567 Lac-Chr11:41730680 Lac12g2096 Lac-Chr12:38090381 4.20E-198 wgd
Lac11g2567 Lac-Chr11:41730680 Lac7g0518 Lac-Chr7:4121012 6.50E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2567 K03320 - csv:101223077 899.042