Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2576 ATGAAGTTCAAAACCCAGATTTTGTTTTGTGTGTTTTTGTACTGTTGGATTGGTTTTTGTGCTGAGTGTTCTGCTGCTGGGTTTAGTGAAGAAGCTTCGGCTTTGGTTTCGTTTAAATCTGGGCTTGTTGATCCGTTGAAGTGGCTTAGAGATTGGAAGTTGGGCGATGGGAATGGTAAGTTTGTAGGGCACTGTAATTGGACTGGAGTTTTTTGCAACTCAGATGGAGCTGTTGAGAAACTGAGCCTTTCTCGCATGAATCTCAGTGGCATTTTGTCGAACGACTTGCAGACATTGACAAGGCTCGGTTCTCTTGATTTGAGTTGCAATGGATTTTCGTCTTCTTTGCCAAAATCTATTGGGAATCTCACGTCCTTGAAGAGTTTTGATGTGAGTCAAAACTTTTTTGTTGGTGAGATTCCGGTGGGCTTTGGGAAGATGTCTGGATTGATGAACTTCAATGCCTCAAGCAACAATTTCTCTGGTTTGATCCCTGAAGATCTTGGAAATGCAACTCTGCTGGAGATTTTGGATCTCCGGGGGAGTTTTCTTGAAGGGTCAATTCCTGTATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAATCTGACCGGTCGAATCCCGGCCGAGATCGGTCAGATGTCGTCGTTAGAGACTGTTATTATTGGATACAATGAGTTTGAAGGAGGGATTCCATCAGAATTTGGAAATCTCACCAATCTGAAGTATCTTGATTTGGCTGTGGGAAATCTTGGTGGTGGCATTCCTGCTGAGCTTGGGAGGCTCAAGCAACTTGAGACATTGTTCCTTTATAAGAATGAATTCGAAGAACGAATTCCGACGTCGATCGGCAATGCTACTTCATTAGTGTTTCTTGATCTCTCAGACAACAAGTTGACAGGGGAAATTCCAGCTGAGGTTGCTGAATTGAAGAATTTGCAGCTGCTGAATCTAATGTGTAACAAGCTGTCTGGTGAAGTACCTCCAGGGATTGGAGGGTTGACAAAACTGCAGGTTCTGGAGCTCTGGAACAACTCGTTTTCGGGCCAACTACCGGGCGATCTCGGCAAGGACTCGGAGTTGGTATGGTTGGATGTCTCATCCAATTCATTCTCTGGTCCAATTCCTGCTTCTTTATGCAATAGGGGCAATCTAACCAAGCTCATCCTTTTCAACAATGCCTTTTCGGGTCCGATTCCGATTGGATTATCGTCGTGTTACTCGCTCGTTCGTGTTCGAATGCAGAACAATCTGCTATCTGGTACAATTCCAGTTGGTTTTGGAAAGCTTGGGAAGCTTCAGAGGCTAGAGTTAGCAAACAACAGTCTCATTGGTAGTATCCCAAGTGATATTTCATCCTCTAAATCCCTTTCTTTTATTGATCTCTCTGAAAATGACCTCCATTCTTCTCTTCCTGCCTCCATTCTTTCCATTCCAAATCTTCAAACTTTTATAATCTCTGACAATAACTTAGAAGGTGAAATTCCAGACCAGTTTCAGGATTGTCCTGCACTTTCTGTTCTCGATCTCTCTTCAAATCATTTCACAGGAAGCATTCCAGAAACCATTGCTTCATGTGAGAGATTGGTAGATCTGAATCTCAGAAACAACCAGTTAACTGGAGAAATCCCAAAACAGATTGCAAACATGCCTTCGTTGTCAGTCCTTGATCTATCGAACAACTCTCTAACCGGTAGAATTCCCGATAATTTCGGTATCTCTCCCGCGTTAGAATCGTTTAATGTATCATACAATAAGCTTGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTCTATGTGGAGCTGTCCTACCTCCATGTTCACCAAATTCAGCATTTGCATCAGGGCACGGGAACTCGCACACGACGCACATTATCGCCAGTTGGATCATCGGAGTGTCTGCAGTTTTGGCAATCTGTATCACTCTTTTCGGTGTTCGATCGTTGTACAAGAGGTGGTACTCGAGTGGAAGTTGCTTTGGAGAGAGATATGAAATGGGTGGTGGAGATTGGCCATGGAGATTGATGGCATTCCAAAGGCTTGGATTCACAAGCAGTGACATTTTGGCTTGCATCAAGGAATCAAATGTAATTGGAATGGGAGCAACTGGGATTGTGTATAAAGCTGAAATGCCACAACTAAAGACAGTTGTAGCAGTCAAAAAGCTGTGGAGATCAGAACCAGATCTTGAAATGGGAAGCAGTGAAGGTCTAGTAGGAGAAGTGAATTTACTGGGAAAGTTAAGGCACAGGAATATCGTTCGTTTACTCGGGTTTATGCATAACGATGTCGACGTAATGATCGTCTACGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTGCATGGTAAACAAGCAGGGAGGCTTCTTGTGGACTGGGTTTCAAGATACAACATAGCAATTGGAGTGGCACAAGGTTTAGCTTATCTCCACCATGATTGCAACCCACCCATCATTCATCGCGACGTTAAGCCAAATAATATACTTCTCGATTCAAGTCTTGAAGCACGGTTAGCTGATTTCGGGTTGGCACGGATGATGGCTCGAAAGAACGAAACGGTTTCGATGGTAGCTGGATCCTATGGCTACATTGCTCCTGAATATGGATACACTTTAAAGGTGGATGAAAAGATTGACATTTACAGCTACGGCGTCGTTCTTTTGGAGCTATTGACAGGGAAGAAGCCATTAGATCCCGAGTTCGGAGAATCTGTGGACATTGTTGAATGGATTAGAAGGAAGGTTAGGGACAACAGACCCTTAGAGGAAGCACTAGATCCCAATCTGGGAAATTCCAAGCATGTTCAGGAAGAAATGCTGTTTGTTCTTAGAATAGCACTTCTCTGCACTGCAAAGCATCCAAAAGACAGGCCTTCCATGAGGGATATTATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGCAATGAAGGATTTGGAACTAACAAAGAGAAGCCAGTTTTCAGCACTTCACCTGTAAATGGCCTTCTGTAG 3060 43.5 MKFKTQILFCVFLYCWIGFCAECSAAGFSEEASALVSFKSGLVDPLKWLRDWKLGDGNGKFVGHCNWTGVFCNSDGAVEKLSLSRMNLSGILSNDLQTLTRLGSLDLSCNGFSSSLPKSIGNLTSLKSFDVSQNFFVGEIPVGFGKMSGLMNFNASSNNFSGLIPEDLGNATLLEILDLRGSFLEGSIPVSFKNLQKLKFLGLSGNNLTGRIPAEIGQMSSLETVIIGYNEFEGGIPSEFGNLTNLKYLDLAVGNLGGGIPAELGRLKQLETLFLYKNEFEERIPTSIGNATSLVFLDLSDNKLTGEIPAEVAELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFSGQLPGDLGKDSELVWLDVSSNSFSGPIPASLCNRGNLTKLILFNNAFSGPIPIGLSSCYSLVRVRMQNNLLSGTIPVGFGKLGKLQRLELANNSLIGSIPSDISSSKSLSFIDLSENDLHSSLPASILSIPNLQTFIISDNNLEGEIPDQFQDCPALSVLDLSSNHFTGSIPETIASCERLVDLNLRNNQLTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESFNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAFASGHGNSHTTHIIASWIIGVSAVLAICITLFGVRSLYKRWYSSGSCFGERYEMGGGDWPWRLMAFQRLGFTSSDILACIKESNVIGMGATGIVYKAEMPQLKTVVAVKKLWRSEPDLEMGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIVYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCNPPIIHRDVKPNNILLDSSLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIRRKVRDNRPLEEALDPNLGNSKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSTSPVNGLL 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41814367 41817563 + Lag0033214.1 Lac11g2576 588434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2576 1019 SMART serkin_6 709 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2576 1019 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Lac11g2576 1019 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 183 283 - -
Lac11g2576 1019 SMART LRR_typ_2 99 123 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 267 291 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 555 579 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 435 459 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 315 338 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 195 219 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 339 363 IPR003591 -
Lac11g2576 1019 SMART LRR_typ_2 507 531 IPR003591 -
Lac11g2576 1019 Gene3D Transferase(Phosphotransferase) domain 1 794 1006 - -
Lac11g2576 1019 Gene3D Phosphorylase Kinase; domain 1 709 793 - -
Lac11g2576 1019 PRINTS Leucine-rich repeat signature 294 307 - -
Lac11g2576 1019 PRINTS Leucine-rich repeat signature 555 568 - -
Lac11g2576 1019 MobiDBLite consensus disorder prediction 985 1019 - -
Lac11g2576 1019 Pfam Leucine Rich Repeat 317 339 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 366 386 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 197 219 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 557 577 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 341 361 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 293 313 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Pfam Leucine Rich Repeat 437 458 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 Gene3D Ribonuclease Inhibitor 182 286 IPR032675 -
Lac11g2576 1019 FunFam MDIS1-interacting receptor like kinase 1 794 1003 - -
Lac11g2576 1019 SUPERFAMILY L domain-like 63 355 - -
Lac11g2576 1019 FunFam Leucine-rich repeat receptor protein kinase EMS1 284 366 - -
Lac11g2576 1019 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Lac11g2576 1019 Gene3D Ribonuclease Inhibitor 366 628 IPR032675 -
Lac11g2576 1019 Pfam Protein kinase domain 711 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2576 1019 SUPERFAMILY RNI-like 284 594 - -
Lac11g2576 1019 FunFam MDIS1-interacting receptor like kinase 1 709 793 - -
Lac11g2576 1019 ProSitePatterns Protein kinases ATP-binding region signature. 715 739 IPR017441 GO:0005524(InterPro)
Lac11g2576 1019 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 367 628 - -
Lac11g2576 1019 MobiDBLite consensus disorder prediction 996 1019 - -
Lac11g2576 1019 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 28 182 - -
Lac11g2576 1019 Pfam Leucine rich repeat 484 544 IPR001611 GO:0005515(InterPro)
Lac11g2576 1019 SUPERFAMILY Protein kinase-like (PK-like) 708 985 IPR011009 -
Lac11g2576 1019 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 988 IPR050647 -
Lac11g2576 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g2576 1019 ProSiteProfiles Protein kinase domain profile. 709 992 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2576 1019 Gene3D Ribonuclease Inhibitor 287 365 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2576 Lac-Chr11:41814367 Lac5g2786 Lac-Chr5:46234150 8.30E-103 dispersed
Lac11g2576 Lac-Chr11:41814367 Lac1g2730 Lac-Chr1:48509523 9.20E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85770 PF00069 Pkinase 2.20E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2576 - - - 0.0