Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2593 ATGAAGAGCGATGTTGAGGTAAAAAGAGGGAGGAGAGCTGGAAAAGGGGAGAATTTTAGGAAGATAATGAATTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGATGATATGATTCCTGCATCAGAATCCGCTTCGGCTTTGGAGAATTCGGCAAGCGAACACTCGTCACGGATTGGCGAGATCGTCAAGAAGCCAGAATTCGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGTGGTTCTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAGAAAGGAAATGTTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCAGTGCAGTAACTAATAAGATAATGACCTCCATTGCTAGAAAAGGAGACCGTCCAAGGAGACGATCGCAAAATTTTACTACCCCGCCGATGTCTATGCATGCTGTTGGTTTACTCTTTGAAGCCATCTTTCTTAAAGCAAAATCATTGCAAGGTCTTGGGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTTGAGCTGCTACCAGAACTATGGAAACTATGTGATTCTTCTCAAGATGCAATCCTTTCTTATCGGCGGGCACTCCTTCATCAGTGGAACCTTGATGCGGGAACCACCGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTCCGGTGCCAAATGGACGGCTCATTTGCACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCTTTAGCAATATCTGGGGATACAAGGGCTTTAGCTGGACAAATAGAGGAATTGCCTCCTGGGATTCTACATCGAAAGGATAGGTACCATGCTCTAGCTCTATGTTATTATGGAGCGGGCGAAGACTTGACTGCTTTGAATTTGTTGAGGAAATTGTTGGCCAGTCATGAGGATCCTAAATCTGTTCCTGCTTTATTAATGGCATCTAAGATTTGTGGAGAGAGCCCGAACCTTGCTGAGGAAGGAGCGAGTTTTGCTCGTAGAGCTCTTCAAAACTTGGATGCTGGATGTGATCAGTTGGAAGGTGTTGCCAACTGTTTGTTGGGTGTCTCACTGTCTGTACATTCTAAATCAGCCATTGCAGATTCCGAGCGGTCCACCAGACAATCTGAGGCGATAGAGGCCCTGGAAGCTGCGCGGAAGAAGACTAGAATGACCGACCCGAATGTTCTCTATCATTTGAGTCTTGAATATGCCGACGAGAGGAAGTTAGATTCAGCACTTCATTATGCGAAGAAGTGTCTCAAACTGGAAGGTGGATCCGATGTTAAAACTTGGTTACTACTGGCTAGGATTCTCTCTGCCCAAAAACGATTTTCAGACGGCGAAAGCATTATAAATGCAGCCCTGGAGCAGACAGTGAAATGGGATCAAGACGAGTTGCTTCGAACGAAAGCAAAGCTTCTGATAGCACATGATGAGTTGAAAGGTGCTATTGACACATATACTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTAGGAGATAAGGAGCTACATAAGAGCAGCAGAAATTATGTTAGAGGCTTGCAAATGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTCACTATGGCACGACGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATTCGTTCTCATTCGCCTACTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCCTTTATGGCTGCTCTGGACATTGATCCAGCTCATGTTCCGAGCTTGGTTTCGTCTGCGGTGGTTATCAGACATCTCGGCCACCGATCGCACCCCGTTATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGACCAGACGAACCACGCTGCGTGGTACAACCTCGGGCTGTTCTACAAATCTGAAGGAACCAAGTCTTCATTGGTAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAGCCCTTTAGATAA 2205 44.31 MKSDVEVKRGRRAGKGENFRKIMNCLCSGEKRAGDDMIPASESASALENSASEHSSRIGEIVKKPEFGNIEEAESSLRESGSLNYEEARALLGRYEYQKGNVEAALHVFEGIDISAVTNKIMTSIARKGDRPRRRSQNFTTPPMSMHAVGLLFEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLCDSSQDAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGSEACPPNLRCQMDGSFAPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALAISGDTRALAGQIEELPPGILHRKDRYHALALCYYGAGEDLTALNLLRKLLASHEDPKSVPALLMASKICGESPNLAEEGASFARRALQNLDAGCDQLEGVANCLLGVSLSVHSKSAIADSERSTRQSEAIEALEAARKKTRMTDPNVLYHLSLEYADERKLDSALHYAKKCLKLEGGSDVKTWLLLARILSAQKRFSDGESIINAALEQTVKWDQDELLRTKAKLLIAHDELKGAIDTYTQLLAVFQVQSKSFGLGDKELHKSSRNYVRGLQMEVWHDLALVYIRLSLWHDAEACLSKSKAIRSHSPTRCHITGMLYEAKGLYKEALKAFMAALDIDPAHVPSLVSSAVVIRHLGHRSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLVEAVECFEAATFLEESAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41923014 41926545 - Lag0033231.1 Lac11g2593 588451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2593 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 SUPERFAMILY TPR-like 531 706 IPR011990 GO:0005515(InterPro)
Lac11g2593 734 Gene3D - 576 731 - -
Lac11g2593 734 SUPERFAMILY TPR-like 441 560 IPR011990 GO:0005515(InterPro)
Lac11g2593 734 PANTHER PROTEIN NPG1 13 734 IPR043376 -
Lac11g2593 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 Pfam Tetratricopeptide repeat 629 655 IPR019734 GO:0005515(InterPro)
Lac11g2593 734 Gene3D Tetratricopeptide repeat domain 32 575 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2593 Lac-Chr11:41923014 Lac6g0246 Lac-Chr6:1984793 4.80E-153 dispersed
Lac2g1040 Lac-Chr2:8275527 Lac11g2593 Lac-Chr11:41923014 9.00E-168 transposed
Lac11g2593 Lac-Chr11:41923014 Lac7g0564 Lac-Chr7:4460765 4.50E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2593 K21843 - csv:101223229 1249.19