Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2619 ATGGAATCCTCGTACTTCTCGTTCTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCGCCGGAATCGTGGAGTGAGTTTTTCTCGATCCACAGTGCCCTAGAAAACTCAATCTCACTGCCGGACGAGTTTCTCGGCAATCGGACGTCGGAATCGGAGTCTAAGATCGTGGTGAAGGAAGAGATCGAAGTGAGTTCGATGGATTTCGAGGAGGAGAAAGAGAGGAAGACGACGGAGAAGAGTTACAGAGGAGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATCAGGGATTCGACGAGGCATGGAGTTAGGGTTTGGCTTGGGACTTTCGACAGCGCTGAGGCGGCCGCTTTAGCTTACGATCAAGCGGCATTCTCGATGAGAGGAGAAATGGCGGTGTTGAATTTTCCGGTGGAAATGGTGAGAGAATCGCTTCAGGACGTTGAGTATCGACTGGAAGAAGGATGCTCGCCGGTGGTGGCGTTGAAGAGGAAACACTCACTGAGAAGGAAGTCGGCGGCGGCGGCGGCGAAAAGGGAAGGGGTGGCGGAGAAGAAGAAGATGAAGAATAAGAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGTGAGAGTAGTAGTAGTATCAGTCCTTTCTGA 684 51.17 MESSYFSFSDSDFSTESSFGSPESWSEFFSIHSALENSISLPDEFLGNRTSESESKIVVKEEIEVSSMDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGEMAVLNFPVEMVRESLQDVEYRLEEGCSPVVALKRKHSLRRKSAAAAAKREGVAEKKKMKNKKNNVVILEDLGTEYLEELLMLSSCESSSSISPF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42197822 42198505 - Lag0033257.1 Lac11g2619 588477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2619 227 CDD AP2 83 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 PANTHER DNA-BINDING DOMAIN 51 190 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac11g2619 227 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 SMART rav1_2 82 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 FunFam Ethylene-responsive transcription factor 2 81 142 - -
Lac11g2619 227 Pfam AP2 domain 82 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2619 227 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677(InterPro)
Lac11g2619 227 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2619 Lac-Chr11:42197822 Lac1g3376 Lac-Chr1:53368239 2.20E-24 dispersed
Lac11g2619 Lac-Chr11:42197822 Lac12g2185 Lac-Chr12:38963186 3.80E-40 wgd
Lac11g2619 Lac-Chr11:42197822 Lac4g2184 Lac-Chr4:41482719 4.30E-44 wgd
Lac11g2619 Lac-Chr11:42197822 Lac7g0597 Lac-Chr7:4768871 1.90E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22987 PF00847 AP2 6.90E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2619 K14516 - csv:101220325 260.381