Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2626 | ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGAGCCACTCATTTTGCTGCCATTCATAAGGTCTTTGGAGCTAGCAATGTCTCTAAGCTTCTCGCTCGTCTCCCTGTTAGTGAGCGCTGTGAGGCTGCTGTCACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTCTCCCATATCTTTGCCCTTCAGCAACAGGTTGTGAACCTTCAAGCACAACTTGCTTCTCTGAAGGAACAAGCGGCGGAGAGCATTATGAACAGCGGCTCCGGTAACGGAGGCGGGGTCGTGAATGAGAAGAATTGCAGAAAGGTTGTTCCTTCTCATCCCCAAGATCTCCATAGCTGGTTTCACTCGGAGCATCCGAACGTGACGCCCGAGTTCAATCCGAACCCGAGTCACAATTCGGCATCGAACCCTTATTATGATGAGAATTATCGCATTATGGTTAATTCTCAGTCGAATGGGAACTATGAACATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAAGCTCAGGCTATTCCATGTACACTCTTGATCAACTGCATTCAAATGTTCAACAATGGAGCTTCAATGACTCTGCTGATGATTTACAATCAGTTGCTTTTGGAAATGCTCGACATTGGTGA | 729 | 45.95 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAESIMNSGSGNGGGVVNEKNCRKVVPSHPQDLHSWFHSEHPNVTPEFNPNPSHNSASNPYYDENYRIMVNSQSNGNYEHHMAKMEESGSYGSFEESSGYSMYTLDQLHSNVQQWSFNDSADDLQSVAFGNARHW | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 42251800 | 42252874 | + | Lag0033264.1 | Lac11g2626 | 588484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2626 | 242 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Lac11g2626 | 242 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
Lac11g2626 | 242 | Coils | Coil | 87 | 114 | - | - | |
Lac11g2626 | 242 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 235 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2626 | Lac-Chr11:42251800 | Lac4g1874 | Lac-Chr4:38028577 | 1.30E-49 | dispersed | |
Lac11g2626 | Lac-Chr11:42251800 | Lac11g2627 | Lac-Chr11:42259733 | 4.60E-44 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22988 | PF03195 | LOB | 4.40E-36 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2626 | K13945 | - | csv:101214764 | 392.504 |