Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2626 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGAGCCACTCATTTTGCTGCCATTCATAAGGTCTTTGGAGCTAGCAATGTCTCTAAGCTTCTCGCTCGTCTCCCTGTTAGTGAGCGCTGTGAGGCTGCTGTCACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTCTCCCATATCTTTGCCCTTCAGCAACAGGTTGTGAACCTTCAAGCACAACTTGCTTCTCTGAAGGAACAAGCGGCGGAGAGCATTATGAACAGCGGCTCCGGTAACGGAGGCGGGGTCGTGAATGAGAAGAATTGCAGAAAGGTTGTTCCTTCTCATCCCCAAGATCTCCATAGCTGGTTTCACTCGGAGCATCCGAACGTGACGCCCGAGTTCAATCCGAACCCGAGTCACAATTCGGCATCGAACCCTTATTATGATGAGAATTATCGCATTATGGTTAATTCTCAGTCGAATGGGAACTATGAACATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAAGCTCAGGCTATTCCATGTACACTCTTGATCAACTGCATTCAAATGTTCAACAATGGAGCTTCAATGACTCTGCTGATGATTTACAATCAGTTGCTTTTGGAAATGCTCGACATTGGTGA 729 45.95 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAESIMNSGSGNGGGVVNEKNCRKVVPSHPQDLHSWFHSEHPNVTPEFNPNPSHNSASNPYYDENYRIMVNSQSNGNYEHHMAKMEESGSYGSFEESSGYSMYTLDQLHSNVQQWSFNDSADDLQSVAFGNARHW 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42251800 42252874 + Lag0033264.1 Lac11g2626 588484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2626 242 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Lac11g2626 242 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Lac11g2626 242 Coils Coil 87 114 - -
Lac11g2626 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2626 Lac-Chr11:42251800 Lac4g1874 Lac-Chr4:38028577 1.30E-49 dispersed
Lac11g2626 Lac-Chr11:42251800 Lac11g2627 Lac-Chr11:42259733 4.60E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22988 PF03195 LOB 4.40E-36 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2626 K13945 - csv:101214764 392.504