Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2627 ATGGCTTCTTCTTCTTCTTCAAACTCTTCTTCTTCTGTGTCAGCTGGCACTGGCTCTCCTTGCGGCGCATGCAAGTTTCTGCGCCGCAAGTGTCTGCCCGATTGCATTTTTGCTCCCTACTTTTGCTCCGAACAAGGCCCTGCAAGGTTCGCCGCCATTCACAAGGTGTTTGGAGCTAGCAATGTCTCTAAGTTGCTCCTCCATGTCCCTGTTCCTGATCGCTGTGAGGCTGTTGTCACCATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAACAGGTGGCATACTTGCAAAGTCAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATTGATTCAGGAGGAAACATGGAGATTCAATGGACAGGAAATTTCAATAATCATCACCCAATTACAGGAATCCCAAATTTTCCAAATTATGAAACTCAAATGATGAACAACCCTGCAGTTTCCCCACAGAGCTCTCTGGAATCTGCTGCCAACAACGACGAAGCATTATTGTTCATGAACAACTTTCAAGAGAGCCAAAGCAGATCCCCAGAAGCTCAATTTCAACAATTTTCAAGAAAAAGACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 684 45.91 MASSSSSNSSSSVSAGTGSPCGACKFLRRKCLPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQSQLMQAKAQLAQTLIDSGGNMEIQWTGNFNNHHPITGIPNFPNYETQMMNNPAVSPQSSLESAANNDEALLFMNNFQESQSRSPEAQFQQFSRKRPASCHADVGELQALALRMMRN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42259733 42260913 - Lag0033265.1 Lac11g2627 588485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2627 227 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Lac11g2627 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 221 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lac11g2627 227 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2627 Lac-Chr11:42259733 Lac12g1883 Lac-Chr12:35332115 1.50E-41 dispersed
Lac11g2626 Lac-Chr11:42251800 Lac11g2627 Lac-Chr11:42259733 4.60E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22989 PF03195 LOB 9.80E-37 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2627 K13944 - csv:101214521 321.627