Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2627 | ATGGCTTCTTCTTCTTCTTCAAACTCTTCTTCTTCTGTGTCAGCTGGCACTGGCTCTCCTTGCGGCGCATGCAAGTTTCTGCGCCGCAAGTGTCTGCCCGATTGCATTTTTGCTCCCTACTTTTGCTCCGAACAAGGCCCTGCAAGGTTCGCCGCCATTCACAAGGTGTTTGGAGCTAGCAATGTCTCTAAGTTGCTCCTCCATGTCCCTGTTCCTGATCGCTGTGAGGCTGTTGTCACCATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAACAGGTGGCATACTTGCAAAGTCAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATTGATTCAGGAGGAAACATGGAGATTCAATGGACAGGAAATTTCAATAATCATCACCCAATTACAGGAATCCCAAATTTTCCAAATTATGAAACTCAAATGATGAACAACCCTGCAGTTTCCCCACAGAGCTCTCTGGAATCTGCTGCCAACAACGACGAAGCATTATTGTTCATGAACAACTTTCAAGAGAGCCAAAGCAGATCCCCAGAAGCTCAATTTCAACAATTTTCAAGAAAAAGACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA | 684 | 45.91 | MASSSSSNSSSSVSAGTGSPCGACKFLRRKCLPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQSQLMQAKAQLAQTLIDSGGNMEIQWTGNFNNHHPITGIPNFPNYETQMMNNPAVSPQSSLESAANNDEALLFMNNFQESQSRSPEAQFQQFSRKRPASCHADVGELQALALRMMRN | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 42259733 | 42260913 | - | Lag0033265.1 | Lac11g2627 | 588485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2627 | 227 | ProSiteProfiles | LOB domain profile. | 19 | 121 | IPR004883 | - | |
Lac11g2627 | 227 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 18 | 221 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Lac11g2627 | 227 | Pfam | Lateral organ boundaries (LOB) domain | 20 | 118 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2627 | Lac-Chr11:42259733 | Lac12g1883 | Lac-Chr12:35332115 | 1.50E-41 | dispersed | |
Lac11g2626 | Lac-Chr11:42251800 | Lac11g2627 | Lac-Chr11:42259733 | 4.60E-44 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22989 | PF03195 | LOB | 9.80E-37 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2627 | K13944 | - | csv:101214521 | 321.627 |