Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2645 ATGGAAGAGGTTGAAGAAGCTAACAGAGCTGCCATAGAGACCTGCCATGGAGTTTTGAATCTCTTGGCAGCTCATCATCAACATCAACCCCTTCAAGACCAAGTTCAGTTGAGCAACTTAATGGTGGAAACTGGAGAAGCAGTTTTCAAGTTCAGAAAAGTGCTTTCTCTTTTGAATTCTGGCTTTGGTCATGCAAGAGTTAGAAGGTTTAACAAGATTCCTCCTCCTCCTCTCCCCAATTTGCCCCAAAAGGCCCTCTTGGATTGCCCAATTTACAGGCCAGATCCTCCAAGCAAAAATCTTCACCCTTTTCACCCTGGTTTCAATGGTAAAGTTTCAATTTTTATGGGTAACCCAGATTTGGAATTGGGTCAAAATGACAAAAACTCCCTCCAAATTCCCAAACAAGCAGCTCCATCTTTAAACTTCAGCTTCCCTCAACAACAACAGCAGCACCAACAGAGGCTGTTGGCTCATCAGAAACAGATGAAACAGCAAGCTGAAATGATGTTTCTTAGGAGCAACAGTGGGATGAATAATCTGAATTTTGACAGCTCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCCTCGTTGAGTATGGACGGTAGCGTCGCCGACGGGAGCTCGTTCCATTTGATCGGACCGTCATCGACGTCGGCCGATAACAAGAGGAAGTTCCCTGGGAGGGGAGATGAAGGGAGCTTGAAATGTGGAAGCACTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAAGTGCCTGCTATTAGTAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAAAAGCCAATTAAGGGTTCTCCTCATCCGAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCATGTCGAGCGGTGCCTAGAAGACCCGTCGATGCTTATTGTAACGTACGAAGGCGAACACAATCACCCGAAAATGTCGACACAATCTGCACACACTTAG 1029 44.9 MEEVEEANRAAIETCHGVLNLLAAHHQHQPLQDQVQLSNLMVETGEAVFKFRKVLSLLNSGFGHARVRRFNKIPPPPLPNLPQKALLDCPIYRPDPPSKNLHPFHPGFNGKVSIFMGNPDLELGQNDKNSLQIPKQAAPSLNFSFPQQQQQHQQRLLAHQKQMKQQAEMMFLRSNSGMNNLNFDSSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTSADNKRKFPGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42453274 42455102 - Lag0033283.1 Lac11g2645 588503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2645 342 Pfam Plant zinc cluster domain 236 272 IPR018872 -
Lac11g2645 342 ProSiteProfiles WRKY domain profile. 269 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2645 342 SMART WRKY_cls 274 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2645 342 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 338 IPR044810 GO:0003700(InterPro)
Lac11g2645 342 Gene3D WRKY domain 258 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2645 342 Pfam WRKY DNA -binding domain 276 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2645 342 FunFam WRKY transcription factor 65 258 335 - -
Lac11g2645 342 SUPERFAMILY WRKY DNA-binding domain 272 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2645 Lac-Chr11:42453274 Lac2g0348 Lac-Chr2:2618629 4.80E-47 dispersed
Lac11g2645 Lac-Chr11:42453274 Lac4g2208 Lac-Chr4:41754574 1.80E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22993 PF03106 WRKY 1.20E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2645 - - - 0.0