Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2650 ATGGCTGGTGATGGATTTGTAATCCCTGTGGAATCTCAGGCGGTTTCAGTGAAGAAGAAGAAGACAACGACGAAGAAGAAGAAGAAGAATACTGTGGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGGGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAACGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTCCTACCACCCAAAATGAATTGGCTGAAAACGAATTTCCATTCGAGTTCCGCGCCTTAGAGGTTGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAGCTAGAGACTGATGCGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAACCGGGTGCAAAAGGTTAGAGATGAACTTGAACAACTTCTCGATGACGATGATGACATGGCGGAACTTTACTTGTCTCGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAGGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGCGCGATTACAATTCGAGAAGAGAATGATGTTGAGGAACTAGAAATGCTACTTGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCATAGAAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTTTTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCCTTTACGTGTCGCTAAGCTCGTATGCACGGTACAAAGGTCTCGTTGAATCTTGA 1194 43.3 MAGDGFVIPVESQAVSVKKKKTTTKKKKKNTVVSRSWVSLDHEGRSTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPPTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPRDYSKMSKTSRASAITIREENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATLYVSLSSYARYKGLVES 397
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 42485541 42489700 - Lag0033288.1 Lac11g2650 588508
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2650 397 Coils Coil 200 227 - -
Lac11g2650 397 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Lac11g2650 397 Gene3D - 18 108 - -
Lac11g2650 397 Pfam Magnesium transporter MRS2-like 262 324 - -
Lac11g2650 397 Pfam Magnesium transporter MRS2-like 42 241 - -
Lac11g2650 397 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 333 384 IPR045863 -
Lac11g2650 397 CDD Mrs2_Mfm1p-like 37 394 IPR039204 -
Lac11g2650 397 Gene3D Magnesium transport protein CorA, transmembrane region 334 388 - -
Lac11g2650 397 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 19 394 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac11g2650 397 FunFam Magnesium transporter MRS2-1 24 108 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2650 Lac-Chr11:42485541 Lac5g2479 Lac-Chr5:43360329 3.60E-30 dispersed
Lac11g0588 Lac-Chr11:5970602 Lac11g2650 Lac-Chr11:42485541 4.30E-85 transposed
Lac12g0153 Lac-Chr12:1701823 Lac11g2650 Lac-Chr11:42485541 1.30E-74 transposed
Lac5g2480 Lac-Chr5:43364428 Lac11g2650 Lac-Chr11:42485541 9.90E-38 transposed
Lac6g0802 Lac-Chr6:6877473 Lac11g2650 Lac-Chr11:42485541 6.70E-66 transposed
Lac11g2650 Lac-Chr11:42485541 Lac12g2225 Lac-Chr12:39424886 3.60E-110 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2650 K16075 - csv:101220452 699.508