Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2650 | ATGGCTGGTGATGGATTTGTAATCCCTGTGGAATCTCAGGCGGTTTCAGTGAAGAAGAAGAAGACAACGACGAAGAAGAAGAAGAAGAATACTGTGGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGGGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAACGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTCCTACCACCCAAAATGAATTGGCTGAAAACGAATTTCCATTCGAGTTCCGCGCCTTAGAGGTTGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAGCTAGAGACTGATGCGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAACCGGGTGCAAAAGGTTAGAGATGAACTTGAACAACTTCTCGATGACGATGATGACATGGCGGAACTTTACTTGTCTCGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAGGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGCGCGATTACAATTCGAGAAGAGAATGATGTTGAGGAACTAGAAATGCTACTTGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCATAGAAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTTTTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCCTTTACGTGTCGCTAAGCTCGTATGCACGGTACAAAGGTCTCGTTGAATCTTGA | 1194 | 43.3 | MAGDGFVIPVESQAVSVKKKKTTTKKKKKNTVVSRSWVSLDHEGRSTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPPTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPRDYSKMSKTSRASAITIREENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATLYVSLSSYARYKGLVES | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 42485541 | 42489700 | - | Lag0033288.1 | Lac11g2650 | 588508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2650 | 397 | Coils | Coil | 200 | 227 | - | - | |
| Lac11g2650 | 397 | Gene3D | Magnesium transport protein CorA, transmembrane region | 111 | 327 | - | - | |
| Lac11g2650 | 397 | Gene3D | - | 18 | 108 | - | - | |
| Lac11g2650 | 397 | Pfam | Magnesium transporter MRS2-like | 262 | 324 | - | - | |
| Lac11g2650 | 397 | Pfam | Magnesium transporter MRS2-like | 42 | 241 | - | - | |
| Lac11g2650 | 397 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 333 | 384 | IPR045863 | - | |
| Lac11g2650 | 397 | CDD | Mrs2_Mfm1p-like | 37 | 394 | IPR039204 | - | |
| Lac11g2650 | 397 | Gene3D | Magnesium transport protein CorA, transmembrane region | 334 | 388 | - | - | |
| Lac11g2650 | 397 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 19 | 394 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Lac11g2650 | 397 | FunFam | Magnesium transporter MRS2-1 | 24 | 108 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2650 | Lac-Chr11:42485541 | Lac5g2479 | Lac-Chr5:43360329 | 3.60E-30 | dispersed | |
| Lac11g0588 | Lac-Chr11:5970602 | Lac11g2650 | Lac-Chr11:42485541 | 4.30E-85 | transposed | |
| Lac12g0153 | Lac-Chr12:1701823 | Lac11g2650 | Lac-Chr11:42485541 | 1.30E-74 | transposed | |
| Lac5g2480 | Lac-Chr5:43364428 | Lac11g2650 | Lac-Chr11:42485541 | 9.90E-38 | transposed | |
| Lac6g0802 | Lac-Chr6:6877473 | Lac11g2650 | Lac-Chr11:42485541 | 6.70E-66 | transposed | |
| Lac11g2650 | Lac-Chr11:42485541 | Lac12g2225 | Lac-Chr12:39424886 | 3.60E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2650 | K16075 | - | csv:101220452 | 699.508 |