Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2650 ATGGCTGGTGATGGATTTGTAATCCCTGTGGAATCTCAGGCGGTTTCAGTGAAGAAGAAGAAGACAACGACGAAGAAGAAGAAGAAGAATACTGTGGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGGGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAACGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTCCTACCACCCAAAATGAATTGGCTGAAAACGAATTTCCATTCGAGTTCCGCGCCTTAGAGGTTGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAGCTAGAGACTGATGCGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAACCGGGTGCAAAAGGTTAGAGATGAACTTGAACAACTTCTCGATGACGATGATGACATGGCGGAACTTTACTTGTCTCGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAGGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGCGCGATTACAATTCGAGAAGAGAATGATGTTGAGGAACTAGAAATGCTACTTGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCATAGAAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTTTTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCCTTTACGTGTCGCTAAGCTCGTATGCACGGTACAAAGGTCTCGTTGAATCTTGA 1194 43.3 MAGDGFVIPVESQAVSVKKKKTTTKKKKKNTVVSRSWVSLDHEGRSTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPPTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPRDYSKMSKTSRASAITIREENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATLYVSLSSYARYKGLVES 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42485541 42489700 - Lag0033288.1 Lac11g2650 588508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2650 397 Coils Coil 200 227 - -
Lac11g2650 397 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Lac11g2650 397 Gene3D - 18 108 - -
Lac11g2650 397 Pfam Magnesium transporter MRS2-like 262 324 - -
Lac11g2650 397 Pfam Magnesium transporter MRS2-like 42 241 - -
Lac11g2650 397 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 333 384 IPR045863 -
Lac11g2650 397 CDD Mrs2_Mfm1p-like 37 394 IPR039204 -
Lac11g2650 397 Gene3D Magnesium transport protein CorA, transmembrane region 334 388 - -
Lac11g2650 397 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 19 394 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac11g2650 397 FunFam Magnesium transporter MRS2-1 24 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2650 K16075 - - csv:101220452 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2650 Lac-Chr11:42485541 Lac5g2479 Lac-Chr5:43360329 3.60E-30 dispersed
Lac11g0588 Lac-Chr11:5970602 Lac11g2650 Lac-Chr11:42485541 4.30E-85 transposed
Lac12g0153 Lac-Chr12:1701823 Lac11g2650 Lac-Chr11:42485541 1.30E-74 transposed
Lac5g2480 Lac-Chr5:43364428 Lac11g2650 Lac-Chr11:42485541 9.90E-38 transposed
Lac6g0802 Lac-Chr6:6877473 Lac11g2650 Lac-Chr11:42485541 6.70E-66 transposed
Lac11g2650 Lac-Chr11:42485541 Lac12g2225 Lac-Chr12:39424886 3.60E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g0588 . 1 425 MRS2 Gene Family AT1G16010 85.6 6.2e-196 681.0
Lac6g0802 . 3 379 MRS2 Gene Family AT1G16010 52.4 1.3e-108 391.0
Lac11g2650 . 1 370 MRS2 Gene Family AT5G64560 69.3 3.5e-131 465.7
Lac12g2225 . 1 383 MRS2 Gene Family AT5G64560 63.5 7.1e-116 414.8
Lac12g0153 . 14 495 MRS2 Gene Family AT3G19640 62.9 1.6e-152 537.0
Lac5g2480 . 60 271 MRS2 Gene Family AT3G58970 64.6 1.5e-64 244.6
Lac5g2479 . 1 162 MRS2 Gene Family AT3G58970 69.3 1.4e-54 211.5
Lac6g0802 . 5 379 MRS2 Gene Family AT2G03620 68.1 2.0e-135 479.9
Lac11g0588 . 13 427 MRS2 Gene Family AT2G03620 54.6 5.5e-109 392.1
Lac11g2650 . 1 332 MRS2 Gene Family AT5G09690 65.4 1.9e-109 393.3
Lac12g2225 . 1 345 MRS2 Gene Family AT5G09690 58.5 2.5e-90 329.7
Lac11g0588 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.0e-78 291.2
Lac11g2650 . 34 292 MRS2 Gene Family AT5G09720 60.5 3.6e-75 279.3
Lac12g2225 . 66 305 MRS2 Gene Family AT5G09720 56.1 1.9e-55 213.8
Lac11g0588 . 1 425 MRS2 Gene Family AT1G80900 84.7 1.2e-191 666.8
Lac6g0802 . 1 379 MRS2 Gene Family AT1G80900 53.2 2.7e-106 383.3
Lac10g2035 . 2 284 MRS2 Gene Family AT5G22830 85.2 6.5e-132 468.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58