Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2666 ATGGCTTTCCAGAAGATCGAAGTAACCCAATTCTATACGATTATTCTATGGTTTATGGTGGACACGATAACCTACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGTGCTCCGGCAGTATTTCAATCCCCGAAATGCCCTCTCTGGAAGCTCTCCGACTACACCTTTCAATCTCCCAGCGCTCCTCATTGCCAAATTGCAATGCATCAGGGTCGAAGAAAGTACCAGGAGGATCGCACCCTTTGTGCTCTCGACGTTCGAATTCCCTTCCTAAGTAAAACAGGTCTTACGGAGGTTCCTGTGGGAATTGTAGCAGTTTTTGATGGTCATAATGGAGCTGAAGCTAGTGAGATGGCTTCTAAGATTTTGTTGGAGTATTTTGTCGTGCATACTTATTTTCTTCTCGATGCCACTTATTCTGGAGTTTTCAAGAGATCCATAAAGACATTTTCAAATGAGAGGGAACATGGTACCATCTTTAATCAGCTTAGTTGGAATGAAGAAATTAGTAACCGTGATCTGGAACTTGGAAGGCTTAAATACTTACTTCCAGTAGATTTTGATGATGATTTTCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATATTGATAAAACATTTTCCAAAGAAGCACATAAAAATAATCTCGTTTCGGGTTCTACTGCTACCATTATATTATTAGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGCACCTCACATGCAAGGGGCTATGGAAATTCTAGACCAGACTCATTTGATGGGCTGACACATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGCCATGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAACTAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCTCACAAGACGTTTGTGACTTGTTGTGGGAAATACACAATGATGGTATGTCGAGTTCTGAACATTCTCCTTCATGCTCATACTCATTGGCAGATTGCATTGTTAGCACTGCCTTTGAAAGGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTATTTCTTCTCGGAGGTTTCAGGAGGGAAGCTTTTTTGCACAGAGAGACTCACGTTTTCCCATATCTGGGATAGACAAGCTCATTAAAGAGCACTCAGCCAAGGGCGTCTCTTCCAATGCTGTGCAATTGGAACATTCTCATCCAGTTGTGTCCAAGTTCAAGAGATTATTAGTTGAAGGAAGATACAATAATCCGGGATGTTTTTATCTATCTGAGAATCTGGATGAATACAAGGATTATGTGTTGAGAACTCAAAATGAAGAAGAAGAATATTTATGTGATCTACCCCACGCTCTTCCAGAATCCCTCAATCAGCCATATGGTGGATCTTTAAATGTGTACAATGACCAAAGCATGTGCTTTCATCTTGGAATGATTGGAGCTAAAGATCAATGCTTTAATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTTGAATCAATTCCTTTCCACGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCACCTGTATTGAGGTATGTGTTAAAGAAAAGGTTTGGTCGGGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGAAACTGCCAGGAAGCCTTTAGTCCAGTAGGAGAGAATATTAATGATTCGTGCAACTCATCTTCTGAAGACGCCAATGTCAGAAACTGTGGTTACTCTTCAAATAGTTCTCAATCCTATTCTCTGGAGGATAACTTGTTCATCATGAAACGTGTAATGGTTGAAAGGGGTGCTGGAGTCTATTTGAGTGGCTTACGGGAAAAATATTTTGGTGAAATATTCTTGAATGCTTCTTCACGCCTTGGAGATGTGTTATCTACTGGAAGATCAAACTTTGTCTTTGAAGAGTCACCGTGGGGATCTAAAGACTTACTGGCAAAGGATGAATCACAGAGTTATAAAGTATGGGAAACTAGGCATTTTAAAAATACTTTTTCAAATCAGTTTAGACCAAAGGGAGTTATCTATGAAGAAGGTTTAAATCATATTGTGAGATATGTAGAATCTTTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTACGAAGGCATGTCCCTCTCAAAGCTCATATATTCTATTGAAGATGCTGATGAAGAAAAAGTTGAACAAAGAAACCACGTTCAAATTTTGCGACCTTCTAAGTGGTGGCATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAAATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGTCATGACCGCAATATCACTCATAGGGATATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAAGGGGAGATGAGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTTAAACATCTATATGGGTCTACTGGGCCCTCCAGAGCGGAACAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAACTCAAGTTGGTACCAGGAGATATCAAGTGCAACTTTGAAGTATGATATGTGGAGCGTTGGTGTAGTGATGTTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGATTTAACCCGTGTTCTTTTGGACCAGCATCTTCAAGGTTGGAATGAAGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTTCCTCAAAAAGTTACCAAAAAAATGTTCATCAAGGAGGTTCACCAGCATCCTGGAAATGCTCTGAAGAAGTTTTTGCCCACCAAATAAAGAGTAGAGATCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGGTTGGTCCGCAGTCTACTACAATGGAATCCAGAGGACCGTTTGGATGTCGATGATGCTTTGCGACACCCTTATTTCCACCCTTCTCCAAAAGGAAGATGA 3276 40.6 MAFQKIEVTQFYTIILWFMVDTITYCFAESSTCLMVYKEGGAPAVFQSPKCPLWKLSDYTFQSPSAPHCQIAMHQGRRKYQEDRTLCALDVRIPFLSKTGLTEVPVGIVAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGVFKRSIKTFSNEREHGTIFNQLSWNEEISNRDLELGRLKYLLPVDFDDDFHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATIILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGTSHARGYGNSRPDSFDGLTHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVASSDGIFEKLSSQDVCDLLWEIHNDGMSSSEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPAISSRRFQEGSFFAQRDSRFPISGIDKLIKEHSAKGVSSNAVQLEHSHPVVSKFKRLLVEGRYNNPGCFYLSENLDEYKDYVLRTQNEEEEYLCDLPHALPESLNQPYGGSLNVYNDQSMCFHLGMIGAKDQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPPVLRYVLKKRFGRGSYGEVWLAFHGNCQEAFSPVGENINDSCNSSSEDANVRNCGYSSNSSQSYSLEDNLFIMKRVMVERGAGVYLSGLREKYFGEIFLNASSRLGDVLSTGRSNFVFEESPWGSKDLLAKDESQSYKVWETRHFKNTFSNQFRPKGVIYEEGLNHIVRYVESFESRSNEIWLVFHYEGMSLSKLIYSIEDADEEKVEQRNHVQILRPSKWWHWLKTTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRRGDENFSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEISSATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDQHLQGWNEGLKQLAYKLRSFMELCILIPGSSSKSYQKNVHQGGSPASWKCSEEVFAHQIKSRDPLKLGFPNVWALRLVRSLLQWNPEDRLDVDDALRHPYFHPSPKGR 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42623504 42647604 + Lag0033304.1 Lac11g2666 588524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2666 1091 Gene3D Transferase(Phosphotransferase) domain 1 823 1085 - -
Lac11g2666 1091 Gene3D - 60 445 IPR036457 -
Lac11g2666 1091 SUPERFAMILY Protein kinase-like (PK-like) 770 1086 IPR011009 -
Lac11g2666 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g2666 1091 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
Lac11g2666 1091 Pfam Protein kinase domain 772 1084 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2666 1091 SMART serkin_6 612 1084 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2666 1091 Pfam Protein phosphatase 2C 201 256 IPR001932 -
Lac11g2666 1091 Pfam Protein phosphatase 2C 303 433 IPR001932 -
Lac11g2666 1091 SMART PP2C_4 60 438 IPR001932 -
Lac11g2666 1091 CDD PP2Cc 75 440 IPR001932 -
Lac11g2666 1091 PANTHER PROTEIN PHOSPHATASE 69 439 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac11g2666 1091 ProSiteProfiles Protein kinase domain profile. 612 1084 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2666 1091 SUPERFAMILY PP2C-like 66 441 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2666 Lac-Chr11:42623504 Lac1g3597 Lac-Chr1:55182928 6.30E-16 dispersed
Lac11g2666 Lac-Chr11:42623504 Lac2g0725 Lac-Chr2:5585682 1.50E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85772 PF00069 Pkinase 2.80E-26 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2666 - - - 0.0