Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2725 ATGGCAACTTCGACCATCTCCAAAGAATGTCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCATATGAGAGTTTCATATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCGAAAGCACTGCAAATCATTTGAATCGTTGAGGGAACATCTAAACGGTCCACTTTCAAAATCAAATTGTTCAAAAGTTTTTTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGGCCGCAGATCTCTCAGTGAGCACCAAGGAATTTGCCGCCTAACAGCACCTGTTCACCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACATTGGACCTTTGTGTTAGGATCTGCCTTGTTGATGAAGATGAGAAATTGATTTTCAATACTTTTGTGCAACCACAAATACCTATCACGAATTACAGGCATGAAGTTACTGGGCTAACGGAAGAACATATGAGGTATGCGATGCCACTGAAAGAAGTCCAAGAAAAAGTATTCAGAATCTTGTTAAATGGAGAATCCATTGGGAGATTGAGACTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATCATCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTGGAACATATTTGGGGTAA 825 40.85 MATSTISKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCRKHCKSFESLREHLNGPLSKSNCSKVFLEQGCGLCLRVLDGRRSLSEHQGICRLTAPVHQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDLCVRICLVDEDEKLIFNTFVQPQIPITNYRHEVTGLTEEHMRYAMPLKEVQEKVFRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYHPLMKTNLVSHSLKYLTGTYLG 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43040131 43042102 - Lag0033363.1 Lac11g2725 588583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2725 274 Gene3D - 130 274 IPR036397 GO:0003676(InterPro)
Lac11g2725 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Lac11g2725 274 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 274 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Lac11g2725 274 SMART exoiiiendus 130 274 IPR013520 -
Lac11g2725 274 SUPERFAMILY Ribonuclease H-like 132 272 IPR012337 -
Lac11g2725 274 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2725 Lac-Chr11:43040131 Lac8g2596 Lac-Chr8:43605910 1.70E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22998 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2725 K18327 - csv:101206525 474.937