Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2725 | ATGGCAACTTCGACCATCTCCAAAGAATGTCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCATATGAGAGTTTCATATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCGAAAGCACTGCAAATCATTTGAATCGTTGAGGGAACATCTAAACGGTCCACTTTCAAAATCAAATTGTTCAAAAGTTTTTTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGGCCGCAGATCTCTCAGTGAGCACCAAGGAATTTGCCGCCTAACAGCACCTGTTCACCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACATTGGACCTTTGTGTTAGGATCTGCCTTGTTGATGAAGATGAGAAATTGATTTTCAATACTTTTGTGCAACCACAAATACCTATCACGAATTACAGGCATGAAGTTACTGGGCTAACGGAAGAACATATGAGGTATGCGATGCCACTGAAAGAAGTCCAAGAAAAAGTATTCAGAATCTTGTTAAATGGAGAATCCATTGGGAGATTGAGACTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATCATCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTGGAACATATTTGGGGTAA | 825 | 40.85 | MATSTISKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCRKHCKSFESLREHLNGPLSKSNCSKVFLEQGCGLCLRVLDGRRSLSEHQGICRLTAPVHQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDLCVRICLVDEDEKLIFNTFVQPQIPITNYRHEVTGLTEEHMRYAMPLKEVQEKVFRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYHPLMKTNLVSHSLKYLTGTYLG | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43040131 | 43042102 | - | Lag0033363.1 | Lac11g2725 | 588583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2725 | 274 | Gene3D | - | 130 | 274 | IPR036397 | GO:0003676(InterPro) | |
Lac11g2725 | 274 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 13 | 42 | IPR013087 | - | |
Lac11g2725 | 274 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 6 | 274 | IPR047021 | GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER) | |
Lac11g2725 | 274 | SMART | exoiiiendus | 130 | 274 | IPR013520 | - | |
Lac11g2725 | 274 | SUPERFAMILY | Ribonuclease H-like | 132 | 272 | IPR012337 | - | |
Lac11g2725 | 274 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 37 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2725 | Lac-Chr11:43040131 | Lac8g2596 | Lac-Chr8:43605910 | 1.70E-74 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22998 | None | None | None | None | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2725 | K18327 | - | csv:101206525 | 474.937 |