Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0024 ATGAGCAAAAGCACCCATTTTATAGATCTTATTGGTCAAGAATCTACATATAGGCCCAATCTTCTTAAAATTCATAATAAAATTCTGCATGCTCAACTTGAGGCTTTCCACATTCGATCGGCGGAGAAAGATCGAAAGTTGGCTGCAGTTTCTTCTGAAAGTAATACAATCGAAATGGGTACAGATGCTGGTATGCAGAGTGTGGTTAGCTACCTCAGACGAACAAAAGAAATTGCTGAAGTAGAGATCTCCTTGCTAAAGAAGGACAAGTTGAGATTGCAGTCACAATTAGAAAATGCTCTTAAAGCCGTGGAGAGTGCACAAAGTTCACTTAATGCTGAGCGTCAAACCTCAAAAGCGTTATTGTTAACCGAGGAGGAAATTAAGTCTTTACAACTTCAGGTTAGGGAGATGAACTTGCTTCGTGAAAGCAATATCCAACTGCGAGAAGAGAATAAGCACAATTTTGAGGAATGTCAGAAACTGCGGGAAGAATGTAAAAAGGCTAAAAGTGATATAGAGAAGTTTGAGGGCATGCTGAAGATGAGACAAATGGAGGTGGAATCCTGTAAAATGGAAATTGAATCACAAAAAGTTGAGAAGACTCATCTTGAATGCAGAATCTCTGAGTTGCTTGAAAGATCTAAAAATATAGATTATGAAGATTATAGTCGTGTGAAGGATGATGTTCAAAGACTGCAGATGGAGCTGAATGAGAAAGATGCAGAAATTGCAAAAATCAAAATGTTAATCTCTGAAAGACAGGAATTGATATCTCAATTGGAGCAAGACCTTTCTAATTGCAGAATTGAACTGAAGGAAAGGGAAAAGAAGCTGAATGATATTCAACATGTTGAGGCCAATTTGAGGGCAGATATGGAGAAACAGAAGAAGTTCTTTTCTCAGTTTAAGAGAAAGCTTGATATTGTCTCAAAAGAGAAGGATGAATTAGGCAAAGAGAATCAAGCTCTTTTGAAGCAGTTGGAAGACATTAAACAAGTGAATACCGTCGGGAAAAGGCCCACTGGAGATTCAACTGGTGAACAGGCAATAGAAGAAAAAGATACTAAAATTCAGATTCTTGAGAAACATCTGGAGAGGCTGAGAGAAGAACTGAAAAGAGAGAAGGAAGATAGTCGTACGGAGAAAAGCAGGCGGTTGAAAATTGAGAAGGCAATAAAGGATTCTTATACTATCGTCGAGCAGGAAAAGTCAAAGATTTTAAATGAGTTGGACAAGCATAGGGTAAACGTGAAGCAGATTTCTGATGAACTTGAGAAACTTAGACAATCTAAAAGCAATCTTTCGGAGGATGCTTTAGTTCAGCCTCTTCCAGGGATTGGTTTGGACGATCTTGCTTCTACCTACATTCTAGCTGCTGAAACTTTCGAGAAGACTGTGCAGTCAGTTTTGACTGATCTTGGAGCTCAAAATGTTCCTTCAGAGGTTTCTCTGGGCGCAGATGCTTTGGTACAAACTAGTACAGGTCCAGATGTTCCTCCCCAAACGCTGGATGTTGCATTGCCAGTGGCTCCTGTAACGACTAATTTTCCTGCCAAAGCCTTGGAAGAAAGGGAAAAGAAAGGTCCTTTATCCAAGGCAAAAGTAGAAACGCGTAAAGCAGGGCGGAAGTTGGTTCGACCTCGTCTTGGAAAACCAGAAGGTGGGCCTCAGGGTGACATAGACATGTCCATATCAGAATTACCAAACAACGAAAGCAGGCGTGCAACTTCCGGAAAATCAGAAACTGAAGGTGAAACAACTACATTGACCCATCAGCTGGCTCGCAAGCGTGTAGCTTCATCAACTTCTGAATTGCATGAACATTCAATTATCCAAGGGGAGAGCAGTACTGAAATGGCAGCTCCTGTCATGAAGAAGGCTAAAGGGTCAGATACCTTGCCTGATGACGTTGGTGGACCATCCTCTACCTCCTTGGAAAGTCTCAAAACTCAACCACCCTTCGAAGAAGTATCTGATGTTAGCGAGTTTCCTCATGGTTCAAATGTGGATGCAATTGATGTTGAAAAAGAGGTTGAAATTGTAGGGGAGAAGGCTGATAGGCCAAAAGAACTATCATTTGATGGATCGAGCCAGAATGAGATACATTCCGACAGAAAAGAAATGTTGGATGAGAATCTGGATAGGCAGATTGGAGCAGAGGTGTCAGATGATGGATTAAAAGATCAGGCTGAACCAGACAATTGGCATCTAAATCCGGAGATCGGAAGTGAGAGAGAGGAAGGCGAGCTGGCACCTGAAGTTATGGAACTCGAGGGTGGTAATAATAATGAAAGCGTTGAAATAGGGGAGGACCATACTGAACCGGTTGCAACACCTGATGCTTCCCCATCTGGAGTTGATGATGATGCGCTGGCTGCCACAGCCATCATGGAGATCGGGGAGATCAACTCTCCTGAGATTCAAAATGAAGAGAAGAATGATGACGGTGATATAGCTGATGAAACTTCCGAACTTCTAGACAAGTCAACTGATTGCAACCAGATTGATGTGGAGAGTGATCAGGCTGTTGAAACTACGTCAGTAGCTACAGAGAATGTTCCAAGTACACCACCAGAAATAAATGACCCGAAACAAGGTAGTCCTACTGTTGCTAAAAGTTCGTCTCCTGTCAGTGGTAGCACGTCTACTACAATAAATTTGCAAGAGCGAGCCAAGCAAAGAGCTATGTTGAGACAGGCCGGAGTTGTTTCTTCATTGGAAAGACGCCCTCCTGTGAGAGGATTACGTGGTCGTGGTGCTCCGCGTGGTGGTCGTGGTCAACGATCTGGGCGTGGACCAGCTGGTGAGTCGAACAAAGGTTAA 2826 42.57 MSKSTHFIDLIGQESTYRPNLLKIHNKILHAQLEAFHIRSAEKDRKLAAVSSESNTIEMGTDAGMQSVVSYLRRTKEIAEVEISLLKKDKLRLQSQLENALKAVESAQSSLNAERQTSKALLLTEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREECKKAKSDIEKFEGMLKMRQMEVESCKMEIESQKVEKTHLECRISELLERSKNIDYEDYSRVKDDVQRLQMELNEKDAEIAKIKMLISERQELISQLEQDLSNCRIELKEREKKLNDIQHVEANLRADMEKQKKFFSQFKRKLDIVSKEKDELGKENQALLKQLEDIKQVNTVGKRPTGDSTGEQAIEEKDTKIQILEKHLERLREELKREKEDSRTEKSRRLKIEKAIKDSYTIVEQEKSKILNELDKHRVNVKQISDELEKLRQSKSNLSEDALVQPLPGIGLDDLASTYILAAETFEKTVQSVLTDLGAQNVPSEVSLGADALVQTSTGPDVPPQTLDVALPVAPVTTNFPAKALEEREKKGPLSKAKVETRKAGRKLVRPRLGKPEGGPQGDIDMSISELPNNESRRATSGKSETEGETTTLTHQLARKRVASSTSELHEHSIIQGESSTEMAAPVMKKAKGSDTLPDDVGGPSSTSLESLKTQPPFEEVSDVSEFPHGSNVDAIDVEKEVEIVGEKADRPKELSFDGSSQNEIHSDRKEMLDENLDRQIGAEVSDDGLKDQAEPDNWHLNPEIGSEREEGELAPEVMELEGGNNNESVEIGEDHTEPVATPDASPSGVDDDALAATAIMEIGEINSPEIQNEEKNDDGDIADETSELLDKSTDCNQIDVESDQAVETTSVATENVPSTPPEINDPKQGSPTVAKSSSPVSGSTSTTINLQERAKQRAMLRQAGVVSSLERRPPVRGLRGRGAPRGGRGQRSGRGPAGESNKG 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 360165 369046 - Lag0014396.1 Lac12g0024 588621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0024 941 Coils Coil 145 179 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 523 550 - -
Lac12g0024 941 Coils Coil 307 334 - -
Lac12g0024 941 Coils Coil 76 117 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 670 753 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 523 788 - -
Lac12g0024 941 Coils Coil 351 385 - -
Lac12g0024 941 Coils Coil 223 278 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 637 652 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 836 891 - -
Lac12g0024 941 Coils Coil 194 214 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 800 941 - -
Lac12g0024 941 MobiDBLite consensus disorder prediction 564 617 - -
Lac12g0024 941 PANTHER NUCLEOPROTEIN TPR-RELATED 22 932 - GO:0005643(PANTHER)|GO:0006406(PANTHER)|GO:0017056(PANTHER)
Lac12g0024 941 Coils Coil 404 438 - -
Lac12g0024 941 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0024 K09291 - - csv:101216510 1400.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43