Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0030 ATGAGCATGTTCCATCCCAAGAAAGCCTCGACTATGAATTCTCACGACAGAGGGATGTGTGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACCGTCGAGCTTCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCTAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCATAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAGTCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTTGCCGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCGCCATGGGTGCCATCCCAAATAGTAACCAACAAGGCGACCTCAACCTCTACGGCGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAGCGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGGGCGGCACCGACAAACTATGGCAGCGGCGGGGGATCGGGAAAAGGTGCGTTGGAGTGGCCGGATGATCTCCGGCTGCAAGACATAGGAATGGCGCCGCCGTCACAAGAAGATGAGTTCAAGGGCATTGGTGGGGGGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTGGTGTCGGATGAGGGCGGCATGGGGGAGCCGCACAAGAAGTATGATATCAATAACAATGCGTCCTTAAAGCTACAGAGGCCGTCGCCCAGAAGGGCACCCCTTTCGGCGGATAGGGCCAACCAGCCTCTTACCAGTGCTCCTCAGCCCACACTCTCACCTTTTGGTTGA 1071 52.66 MSMFHPKKASTMNSHDRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMISRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAAMGAIPNSNQQGDLNLYGGDQLDLQQNVDGFMPHSDSLLCLGKKKPRAAPTNYGSGGGSGKGALEWPDDLRLQDIGMAPPSQEDEFKGIGGGLVERDHLEEMYEAKPVVSDEGGMGEPHKKYDINNNASLKLQRPSPRRAPLSADRANQPLTSAPQPTLSPFG 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 448178 450082 - Lag0014402.1 Lac12g0030 588627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0030 356 Gene3D - 33 91 - -
Lac12g0030 356 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Lac12g0030 356 FunFam Myb family transcription factor 33 91 - -
Lac12g0030 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 199 IPR046955 GO:0003700(InterPro)
Lac12g0030 356 MobiDBLite consensus disorder prediction 339 356 - -
Lac12g0030 356 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Lac12g0030 356 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Lac12g0030 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Lac12g0030 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677(InterPro)
Lac12g0030 356 MobiDBLite consensus disorder prediction 301 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0030 Lac-Chr12:448178 Lac9g2297 Lac-Chr9:42305878 3.40E-88 dispersed
Lac12g0030 Lac-Chr12:448178 Lac6g1592 Lac-Chr6:22108782 1.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23002 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0030 - - - 0.0