Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0030 ATGAGCATGTTCCATCCCAAGAAAGCCTCGACTATGAATTCTCACGACAGAGGGATGTGTGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACCGTCGAGCTTCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCTAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCATAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAGTCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTTGCCGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCGCCATGGGTGCCATCCCAAATAGTAACCAACAAGGCGACCTCAACCTCTACGGCGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAGCGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGGGCGGCACCGACAAACTATGGCAGCGGCGGGGGATCGGGAAAAGGTGCGTTGGAGTGGCCGGATGATCTCCGGCTGCAAGACATAGGAATGGCGCCGCCGTCACAAGAAGATGAGTTCAAGGGCATTGGTGGGGGGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTGGTGTCGGATGAGGGCGGCATGGGGGAGCCGCACAAGAAGTATGATATCAATAACAATGCGTCCTTAAAGCTACAGAGGCCGTCGCCCAGAAGGGCACCCCTTTCGGCGGATAGGGCCAACCAGCCTCTTACCAGTGCTCCTCAGCCCACACTCTCACCTTTTGGTTGA 1071 52.66 MSMFHPKKASTMNSHDRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMISRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAAMGAIPNSNQQGDLNLYGGDQLDLQQNVDGFMPHSDSLLCLGKKKPRAAPTNYGSGGGSGKGALEWPDDLRLQDIGMAPPSQEDEFKGIGGGLVERDHLEEMYEAKPVVSDEGGMGEPHKKYDINNNASLKLQRPSPRRAPLSADRANQPLTSAPQPTLSPFG 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 448178 450082 - Lag0014402.1 Lac12g0030 588627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0030 356 Gene3D - 33 91 - -
Lac12g0030 356 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Lac12g0030 356 FunFam Myb family transcription factor 33 91 - -
Lac12g0030 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 199 IPR046955 GO:0003700(InterPro)
Lac12g0030 356 MobiDBLite consensus disorder prediction 339 356 - -
Lac12g0030 356 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Lac12g0030 356 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Lac12g0030 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Lac12g0030 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677(InterPro)
Lac12g0030 356 MobiDBLite consensus disorder prediction 301 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0030 Lac-Chr12:448178 Lac9g2297 Lac-Chr9:42305878 3.40E-88 dispersed
Lac12g0030 Lac-Chr12:448178 Lac6g1592 Lac-Chr6:22108782 1.40E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23002 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Lac TF