Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0036 ATGCAGAGCCCCTCGCTCTCTTCTTCCACAAACACACACTCTAAACCTTCCTCTCGGCTCTCACCAGCTCGCTGCTCCTTCATTCTTGTGCTGATTAAGTTGAGGATCACCATGGATTTTCCCAGACTCTGCCTTCTTCTTCTGTTTCTATCCACTTGTGCAACTGAATTCTTCACTCCCTGTGATTGTAGAAGTGTGCATAGACGCCGTACCATTCACAAGTCGAAGAAACTCCAACTGGCGAAATACTGGGACGTGATTGGCCAAAAGGTGAGCCACGTGGATGGGGCGACCAATTCTCAACCTTACGTGAGCTCTCCATTCACTCTGCCGCCGTTCGATTCGCTTCCTCCTTATTCGCTGCCGGACAACGCGCCACCGTACTGCTCGTATCCGCCGAATACTCCTCAGCCTCCTTCCTACATTTCATCTCCTCCGCCACCGCCCTTCTATTATCTTCCGCCGGTGCTCCCCTCTCAGAGCCCACCGCCCAGCCCAACCTACGGCTTTATTCCCTCTCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCGGTGATTTACCCTCCGCCGAGCGTGCCGCCGCCTCCCCACTCCGCGCCCAATATAGCCCTATGGTGCGTGGCCAAGCCCTCGGTGCCGGACCCGATAATTCAAGAGGCGATGAACTACGCCTGCGGGACGGTGGCGGATTGCAATTCCATTCTCCCCAACGGCCCCTGCTTTCTGCCCAACACGCTCCTCGCACACGCTTCCTACGCCTTCAACAGTTATTGGCAGAGAACCAAAGTGGGCGGCGGCACGTGTGAGTTTGGCGGTACTGCTATGCTCGTCAGTGTTGATCCTAGTTATGATGGGTGCCATTTCGTTTACACGTAG 939 56.12 MQSPSLSSSTNTHSKPSSRLSPARCSFILVLIKLRITMDFPRLCLLLLFLSTCATEFFTPCDCRSVHRRRTIHKSKKLQLAKYWDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPPYSLPDNAPPYCSYPPNTPQPPSYISSPPPPPFYYLPPVLPSQSPPPSPTYGFIPSPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCNSILPNGPCFLPNTLLAHASYAFNSYWQRTKVGGGTCEFGGTAMLVSVDPSYDGCHFVYT 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 500216 502357 + Lag0014408.1 Lac12g0036 588633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0036 312 PANTHER BETA-1,3 GLUCANASE 52 309 IPR044788 -
Lac12g0036 312 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0036 312 Pfam X8 domain 225 296 IPR012946 -
Lac12g0036 312 PRINTS Proline rich extensin signature 127 148 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 159 175 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 179 196 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 115 127 - -
Lac12g0036 312 Gene3D - 220 310 - -
Lac12g0036 312 FunFam Glucan endo-1,3-beta-glucosidase 4 221 312 - -
Lac12g0036 312 SMART X8_cls 225 309 IPR012946 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0036 Lac-Chr12:500216 Lac2g1095 Lac-Chr2:8661133 2.50E-34 dispersed
Lac12g0036 Lac-Chr12:500216 Lac9g1205 Lac-Chr9:28174815 1.20E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0036 - - - 0.0