Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0036 ATGCAGAGCCCCTCGCTCTCTTCTTCCACAAACACACACTCTAAACCTTCCTCTCGGCTCTCACCAGCTCGCTGCTCCTTCATTCTTGTGCTGATTAAGTTGAGGATCACCATGGATTTTCCCAGACTCTGCCTTCTTCTTCTGTTTCTATCCACTTGTGCAACTGAATTCTTCACTCCCTGTGATTGTAGAAGTGTGCATAGACGCCGTACCATTCACAAGTCGAAGAAACTCCAACTGGCGAAATACTGGGACGTGATTGGCCAAAAGGTGAGCCACGTGGATGGGGCGACCAATTCTCAACCTTACGTGAGCTCTCCATTCACTCTGCCGCCGTTCGATTCGCTTCCTCCTTATTCGCTGCCGGACAACGCGCCACCGTACTGCTCGTATCCGCCGAATACTCCTCAGCCTCCTTCCTACATTTCATCTCCTCCGCCACCGCCCTTCTATTATCTTCCGCCGGTGCTCCCCTCTCAGAGCCCACCGCCCAGCCCAACCTACGGCTTTATTCCCTCTCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCGGTGATTTACCCTCCGCCGAGCGTGCCGCCGCCTCCCCACTCCGCGCCCAATATAGCCCTATGGTGCGTGGCCAAGCCCTCGGTGCCGGACCCGATAATTCAAGAGGCGATGAACTACGCCTGCGGGACGGTGGCGGATTGCAATTCCATTCTCCCCAACGGCCCCTGCTTTCTGCCCAACACGCTCCTCGCACACGCTTCCTACGCCTTCAACAGTTATTGGCAGAGAACCAAAGTGGGCGGCGGCACGTGTGAGTTTGGCGGTACTGCTATGCTCGTCAGTGTTGATCCTAGTTATGATGGGTGCCATTTCGTTTACACGTAG 939 56.12 MQSPSLSSSTNTHSKPSSRLSPARCSFILVLIKLRITMDFPRLCLLLLFLSTCATEFFTPCDCRSVHRRRTIHKSKKLQLAKYWDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPPYSLPDNAPPYCSYPPNTPQPPSYISSPPPPPFYYLPPVLPSQSPPPSPTYGFIPSPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCNSILPNGPCFLPNTLLAHASYAFNSYWQRTKVGGGTCEFGGTAMLVSVDPSYDGCHFVYT 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 500216 502357 + Lag0014408.1 Lac12g0036 588633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0036 312 PANTHER BETA-1,3 GLUCANASE 52 309 IPR044788 -
Lac12g0036 312 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0036 312 Pfam X8 domain 225 296 IPR012946 -
Lac12g0036 312 PRINTS Proline rich extensin signature 127 148 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 159 175 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 179 196 - -
Lac12g0036 312 PRINTS Proline rich extensin signature 115 127 - -
Lac12g0036 312 Gene3D - 220 310 - -
Lac12g0036 312 FunFam Glucan endo-1,3-beta-glucosidase 4 221 312 - -
Lac12g0036 312 SMART X8_cls 225 309 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0036 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0036 Lac-Chr12:500216 Lac2g1095 Lac-Chr2:8661133 2.50E-34 dispersed
Lac12g0036 Lac-Chr12:500216 Lac9g1205 Lac-Chr9:28174815 1.20E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36