Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0041 ATGGCCGCAGCTTCGCTCTTCAGATCTGCAGCAACCGCTTCTTTTGTTCAAGCGTCGATTTCTCGCTCTTCTGCCGATCAGTCCACGGCTTCGTGCGTTAATTTGAATTCTTCCAAGTTTCAATCTAGCATTTTCGGTGCACATGTTTCAAGCGGATCTTCTTCCTTAAAGCTTTTTAGACCCCGGAATATTCAACCTACTAAAGCTACAGCCACTGAAATACCTCCCACAGTTCAGAAATCAAGGAGCGGTGGAAAGACGAAGGTCGGAATCAATGGTTTTGGACGAATTGGAAGGTTGGTATTACGGATAGCAACCTCGAGGGATGATATTGATGTAGTTGCAGTTAATGACCCTTTTGTTGATGCGAAGTACATGGCATACATGTTCAAGTTTGACTCTACACATGGTAATTTTAAGGGCACGATAAACATTGTGGATGATTCAACTTTGGAGATCAATGGGAAACAAATAAAAGTTTTAAGTAAAAGGGATCCAGCTGAAATTCCTTGGGGCGAGTTTGGGGCCGAGTTTGTAGTTGAATCCTCTGGGGTTTTCACAACGACAAATAAGGCATCAGCACACTTGAAGGGTGGAGCCAAGAAAGTCGTCATATCAGCTCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGAAGACATATAAGCCAAGCATGGATATTGTTTCAAATGCAAGTTGTACCACGAATTGTCTTGCTCCTCTTGCTAAGGTGGTTCATGAGGTTTTTGGTATCGCAGAAGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAGACTGTTGATGGCCCCTCAATGAAGGATTGGCGTGGGGGTCGTGGAGCTGCACAAAATATCATCCCGAGTTCTACCGGTGCTGCAAAGGCTGTGGGGAAAGTTCTTCCTGAGCTCAACGGAAAACTCACAGGGATGGCATTTCGTGTTCCAACACCTAATGTATCTGTTGTGGACTTGACTTGTAGACTAGAGAAGAGTGCTTCTTATGAAGATGTCAAAGCTGCAATCAAGTATGCCTCAGAAGGCCCACTCAAGGGTATCCTCGGTTACACGGATGAGGACGTTGTCTCCAACGATTTTGTCGGTGACTCAAGGTCAAGTATATTCGATGCAAAGGCCGGAATAGGTCTCAGCAACTCCTTCATGAAGTTTATCTCCTGGTATGACAACGAGTGGGGATACAGCAACCGAGTGCTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAACAAGTGA 1269 45.47 MAAASLFRSAATASFVQASISRSSADQSTASCVNLNSSKFQSSIFGAHVSSGSSSLKLFRPRNIQPTKATATEIPPTVQKSRSGGKTKVGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFKGTINIVDDSTLEINGKQIKVLSKRDPAEIPWGEFGAEFVVESSGVFTTTNKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPSMDIVSNASCTTNCLAPLAKVVHEVFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSNSFMKFISWYDNEWGYSNRVLDLIEHMALVAANK 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 531669 535517 - Lag0014413.1 Lac12g0041 588638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0041 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 188 IPR020828 GO:0051287(InterPro)
Lac12g0041 422 Gene3D Dihydrodipicolinate Reductase; domain 2 236 402 - -
Lac12g0041 422 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 88 410 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Lac12g0041 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 235 400 - -
Lac12g0041 422 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 234 241 IPR020830 GO:0016620(InterPro)
Lac12g0041 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 87 246 - -
Lac12g0041 422 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 82 416 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 SMART gp_dh_n_7 87 236 IPR020828 GO:0051287(InterPro)
Lac12g0041 422 Gene3D - 88 415 - -
Lac12g0041 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 241 398 IPR020829 GO:0016620(InterPro)
Lac12g0041 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 235 398 - -
Lac12g0041 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 331 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 354 369 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 248 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 257 273 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620(InterPro)
Lac12g0041 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 252 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0041 Lac-Chr12:531669 Lac9g2291 Lac-Chr9:42253024 2.90E-195 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0041 K00134 - csv:101215988 767.689