Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0043 ATGAAAGATATACTAGAGACAACTTTTCTCCACTCTTGCATTTTGATTTGGTATCAATGTGGGACTTTCGTCGCACTTGCAATAATCCTCTCCTCGAACAAAGTACCACCAAGTCTCCTCTCAAATATCTATCCATCCAATTCTCTAGGCTTTACCGTTTTATCAAGAGTTTACTCTTATCCAGGACAACTCTTTTACTCCGGAGTATACTGTCCGTCCAACAAAGCTCAACCACGAATCTCCTCACAGAATCTTCTCTGGATTATTCCAAACACATCTTTTCTCGGACTGTGTGAGTTGTGTGGACTTGGAGATGAGGCGATTGTTATGGCTACCAAAAAGAGCGTCGGTACTCTGAAGGAGGCTGATTTGAAGGGAAAGAAGGTGTTTGTGAGGGTTGATCTCAACGTTCCTTTGGATGACAACTTCAACATCACCGATGACACCAGAATCCGTGCCGCTGTGCCTACCATTCAGTATTTGCTCGGTCATGGTGCTAGGGTCATCCTCTCCAGCCACTTGGGACGCCCAAAGGGTGTAACACCGAAATACAGTTTGAAACCTCTCATTCCCAGGCTTTCTGAGCTCCTTGGACTTCAGGTGGTAATGGCTAATGACTGTATTGGCGAGGAAGTCGAGAAGTTGGTCGCTGCATTGCCTGAGGGAGGTGTATTGCTGCTTGAAAACGTGAGATTTTACAAGGAGGAAGAGAAGAATGACCCTGAGTTTGCCAAGAAGTTGGCTTCCCTCGCGGATCTCTATGTTAATGATGCCTTCGGAACTGCTCACAGGGCTCACGCTTCCACTGAGGGTGTGGCTAAGTACTTGAAACCTTCTGTTGCTGGGTTCCTCATGCAGAAGGAACTAGACTACCTTGTTGGAGCTGTGTCTAATCCCAAGAGACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCGTCAAAGATTGGAGTGATTGAATCCTTGTTGGAGAAGGTTAACCTTCTTTTCCTTGGTGGAGGAATGATCTTTACCTTCTACAAGGCACAGGGTCACTCAGTGGGTTCATCACTTGTTGAAGAAGACAAGCTTGACCTCGCTAACTCACTCATGGAGAAGGCAAAAGCCAAGGGAGTTTCTCTTTTGCTTCCAACTGATGTAGTGATAGCCGATAAATTTGCTGCTGATGCTAACAGCAAGGTTGTGGCAGCATCAAGTATCCCAGATGGCTGGATGGGGTTGGATATTGGACCTGATTCAATCAAGAGTTTCAGTGAAGCTTTGGATTCTACCCAAACCATTATTTGGAATGGACCTATGGGAGTGTTTGAGTTTGACAAGTTTGCAGCTGGAACAGAGGCCATTGCAAGGAAGTTGGCAGAGCTGAGTGGGAAGGGAGTGACCACCATAATTGGAGGAGGTGACTCTGTTGCGGCTGTTGAGAAGGTTGGGCTCGCGGACAAGATGAGCCACATCTCCACTGGTGGCGGTGCCAGCTTAGAGCTTCTTGAAGGAAAATCACTTCCTGGCGTTCTTGCCCTCAACGATGCTTGA 1533 46.9 MKDILETTFLHSCILIWYQCGTFVALAIILSSNKVPPSLLSNIYPSNSLGFTVLSRVYSYPGQLFYSGVYCPSNKAQPRISSQNLLWIIPNTSFLGLCELCGLGDEAIVMATKKSVGTLKEADLKGKKVFVRVDLNVPLDDNFNITDDTRIRAAVPTIQYLLGHGARVILSSHLGRPKGVTPKYSLKPLIPRLSELLGLQVVMANDCIGEEVEKLVAALPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNLLFLGGGMIFTFYKAQGHSVGSSLVEEDKLDLANSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVAASSIPDGWMGLDIGPDSIKSFSEALDSTQTIIWNGPMGVFEFDKFAAGTEAIARKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKSLPGVLALNDA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 547634 551198 - Lag0014415.1 Lac12g0043 588640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0043 510 PANTHER PHOSPHOGLYCERATE KINASE 107 509 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Lac12g0043 510 SUPERFAMILY Phosphoglycerate kinase 117 509 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 FunFam Phosphoglycerate kinase 120 293 - -
Lac12g0043 510 ProSitePatterns Phosphoglycerate kinase signature. 128 138 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 462 473 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 145 167 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 222 237 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 304 323 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 281 303 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 485 502 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 250 272 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 123 139 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 426 451 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Hamap Phosphoglycerate kinase [pgk]. 118 509 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Gene3D - 296 508 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 CDD Phosphoglycerate_kinase 119 509 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 FunFam Phosphoglycerate kinase 298 485 - -
Lac12g0043 510 Pfam Phosphoglycerate kinase 119 499 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Gene3D - 117 293 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0043 K00927 - - csv:101215513 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0043 Lac-Chr12:547634 Lac9g2290 Lac-Chr9:42248715 1.10E-196 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1132 Blo04g00465 . . . Bpe07g00471 . . . . . . . . . Sed04g3516 . . Bhi05g01998 Tan02g0042 Cmetu01g1031 Lac12g0043 Hepe02g0016 . . . . . . . . . . . . . . . . . Blo15g00633 . . . . . Bma03g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72