Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0043 ATGAAAGATATACTAGAGACAACTTTTCTCCACTCTTGCATTTTGATTTGGTATCAATGTGGGACTTTCGTCGCACTTGCAATAATCCTCTCCTCGAACAAAGTACCACCAAGTCTCCTCTCAAATATCTATCCATCCAATTCTCTAGGCTTTACCGTTTTATCAAGAGTTTACTCTTATCCAGGACAACTCTTTTACTCCGGAGTATACTGTCCGTCCAACAAAGCTCAACCACGAATCTCCTCACAGAATCTTCTCTGGATTATTCCAAACACATCTTTTCTCGGACTGTGTGAGTTGTGTGGACTTGGAGATGAGGCGATTGTTATGGCTACCAAAAAGAGCGTCGGTACTCTGAAGGAGGCTGATTTGAAGGGAAAGAAGGTGTTTGTGAGGGTTGATCTCAACGTTCCTTTGGATGACAACTTCAACATCACCGATGACACCAGAATCCGTGCCGCTGTGCCTACCATTCAGTATTTGCTCGGTCATGGTGCTAGGGTCATCCTCTCCAGCCACTTGGGACGCCCAAAGGGTGTAACACCGAAATACAGTTTGAAACCTCTCATTCCCAGGCTTTCTGAGCTCCTTGGACTTCAGGTGGTAATGGCTAATGACTGTATTGGCGAGGAAGTCGAGAAGTTGGTCGCTGCATTGCCTGAGGGAGGTGTATTGCTGCTTGAAAACGTGAGATTTTACAAGGAGGAAGAGAAGAATGACCCTGAGTTTGCCAAGAAGTTGGCTTCCCTCGCGGATCTCTATGTTAATGATGCCTTCGGAACTGCTCACAGGGCTCACGCTTCCACTGAGGGTGTGGCTAAGTACTTGAAACCTTCTGTTGCTGGGTTCCTCATGCAGAAGGAACTAGACTACCTTGTTGGAGCTGTGTCTAATCCCAAGAGACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCGTCAAAGATTGGAGTGATTGAATCCTTGTTGGAGAAGGTTAACCTTCTTTTCCTTGGTGGAGGAATGATCTTTACCTTCTACAAGGCACAGGGTCACTCAGTGGGTTCATCACTTGTTGAAGAAGACAAGCTTGACCTCGCTAACTCACTCATGGAGAAGGCAAAAGCCAAGGGAGTTTCTCTTTTGCTTCCAACTGATGTAGTGATAGCCGATAAATTTGCTGCTGATGCTAACAGCAAGGTTGTGGCAGCATCAAGTATCCCAGATGGCTGGATGGGGTTGGATATTGGACCTGATTCAATCAAGAGTTTCAGTGAAGCTTTGGATTCTACCCAAACCATTATTTGGAATGGACCTATGGGAGTGTTTGAGTTTGACAAGTTTGCAGCTGGAACAGAGGCCATTGCAAGGAAGTTGGCAGAGCTGAGTGGGAAGGGAGTGACCACCATAATTGGAGGAGGTGACTCTGTTGCGGCTGTTGAGAAGGTTGGGCTCGCGGACAAGATGAGCCACATCTCCACTGGTGGCGGTGCCAGCTTAGAGCTTCTTGAAGGAAAATCACTTCCTGGCGTTCTTGCCCTCAACGATGCTTGA 1533 46.9 MKDILETTFLHSCILIWYQCGTFVALAIILSSNKVPPSLLSNIYPSNSLGFTVLSRVYSYPGQLFYSGVYCPSNKAQPRISSQNLLWIIPNTSFLGLCELCGLGDEAIVMATKKSVGTLKEADLKGKKVFVRVDLNVPLDDNFNITDDTRIRAAVPTIQYLLGHGARVILSSHLGRPKGVTPKYSLKPLIPRLSELLGLQVVMANDCIGEEVEKLVAALPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNLLFLGGGMIFTFYKAQGHSVGSSLVEEDKLDLANSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVAASSIPDGWMGLDIGPDSIKSFSEALDSTQTIIWNGPMGVFEFDKFAAGTEAIARKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKSLPGVLALNDA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 547634 551198 - Lag0014415.1 Lac12g0043 588640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0043 510 PANTHER PHOSPHOGLYCERATE KINASE 107 509 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Lac12g0043 510 SUPERFAMILY Phosphoglycerate kinase 117 509 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 FunFam Phosphoglycerate kinase 120 293 - -
Lac12g0043 510 ProSitePatterns Phosphoglycerate kinase signature. 128 138 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 462 473 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 145 167 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 222 237 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 304 323 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 281 303 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 485 502 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 250 272 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 123 139 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 PRINTS Phosphoglycerate kinase family signature 426 451 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Hamap Phosphoglycerate kinase [pgk]. 118 509 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Gene3D - 296 508 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 CDD Phosphoglycerate_kinase 119 509 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 FunFam Phosphoglycerate kinase 298 485 - -
Lac12g0043 510 Pfam Phosphoglycerate kinase 119 499 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lac12g0043 510 Gene3D - 117 293 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0043 Lac-Chr12:547634 Lac9g2290 Lac-Chr9:42248715 1.10E-196 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0043 K00927 - csv:101215513 744.962