Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0052 ATGCTTTCTGATGCAGCTCAGTGGCCTTTCTTCCGCTCCCTTGCCGCCGCCACCGTCGTCCTTCCGTTCGTGGCGCCGCAGCCTCCCTCCTTGCGGTGGTTCGAAAGAGGGGGTAAAAACCTCAGTTATCTCTCACCACTCCAAGGAGGCTTTCGTTCTGCCTTTGCTATGGGGAGGAAACGTAATAACGAGAAACAAAAGGTAATTCTGCCGCCGGAGCTTCCACCGGAGATCACTGAGGAGGAAATTGAGGTCTCTGATGAGGACTTGCAGTTTGTCAATGAGAACCGAGACTATGCCATCTCTGTTTCCAGTCTAGACACTCAATCCATTACCAAGCATGTTACGCGTGTTGCTAATGTTGAAGAAGATGCTTTGGAGGCTTTATACGAGAAGCGTTTGCGCAAGAAGTCACTGCAGAAACAGGAGGAGGAAAATAAGGTCCAGGTTGATCGTGTGGATGCCCTTCCTGTCAAAACACTTGACGGGAAACTCTACTATCGGACATCCAAACCATCTGATGCACCTGAAAATGGTGCCAACGAAGAGGAAGTGGAAGAGGATCAGGTAGATAATGGTGTATTGAAGTTAACTAAAGCTGAAAGGAGGGCAAAGCAAAAGAAAATTAAGAAGGTTGCTAAGAAACAAGAGGATGTAACCAAAGCCGAAGAAGTTCAACCAACCCCACAAGCAGCAGTTGTGGCTGAAGTGGTAGAAGATCTTACGGCTGAAAAGACATTTGAAAGTAAGAAGCAGAAACTTGCGGAGCTTGGAATTGCATTGCTGGCAGACCCAAATTCCAATATTAAATCTCTGAAGGAGATGTTACAGATCGCTAAAGATAATGATCAAGCAATTGTGAAACTTGGACTTCTATCATTATTGGCCGTTTTTAAAGACATTATACCTGGTTACCGGATTCGGCTTCCGACGGAAAAGGAGCTGGAAATGAAAGTATCCAAGGATGTTAAGAAAATGCGGTTCTATGAGTCTACTCTTCTCACTGCTTATAAGGGATACCTGCAGAAGCTAATGTCATTAGAAAAATTGACGTCATTTCAACATGTGGTTATTCGCTGTATCTGTACTTTGCTTGATGCAGTTCCCCACTTCAACTTTCGAGAGACATTGATAGGTATCGTTGTTAAAAACATAAGCTCTCCTGATGATGTTGTAAGAAAACTTTGTTGTGGTGCCATTAAGTCTTTATTCATCAACGAGGGAAAGCATGGCGGTGAAGCGACTGTGGAGGCTGTCCGGTTGATTGCTATTCATGTGAAATCTCATGACTGCCAGTTGCATCCTGATTCCATCGAGCCTTTCATATATTTAACATTTGACGAGGATCTGGGGAAAGCAGAAAAGAAAGACGAGCATAGTAAAGTGAAGAACAAAAAACACAAGAAAATAAAGAATAGGGAGGATTCAAGTCATTCGCAAGGGAATGATGGAAGACAAAGTATGAGGACAAAGTTTACTGAAGAGGTTGCTGCTGATTACAGGGCTGCTACTCTTGCTCCAGATGTAATGAAGCAAAGAGAGATGCAGTCGGATACACTTTCTGCTGTGTTTGAAACATATTTCCGGATCTTAAGGCATACAATGCAGTCATTAAGTGCTAGGCCTGAAGCAAGTACTACTACATCTACTACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGATTGGGGAAATTCTCGCATCTCATCGATTTAGATTTCATGGGCGATCTTATGAATTATCTGAAAAGGCTTGCATCTGGTGGTGATAATTCTTCAGAGAAACAGTCACAATGTTTGACTGTGTCTGAGCGTCTTCAATGTTGCATTGTGGCATTTAAAGTAATGAGGAAAAACCTTGATGCTTTGAATGTTGATCTACAGGACTTCTTTGTCCAGCTGTACAATATTGTACTTGAGTACAGGCCTGGGAGAGATCGTGGTGAAGTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATGATAGACAGCATGACATGCAAAAGGCAGCTGCATTTATTAAGCGTTTGTCTACTTTCTCATTATGCTTTGGATCTGCAGAGTCGTTGGCAGCCTTGGTCACCGTAAAGCATCTTCTTCTGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAATGATGCTGGAGGAGGTTCCGTGTCTGGCTCAATTGCGAAATATCAGCCATATGCATCTGATCCAAATTTAAGTGGCGCTCTTGCTTCTGTCCTTTGGGAACTTGATCTTCTGTGGAAGCATTATCATCCAGCTGTGTCAACGATGGCTGCTAGCATCTCAAGCATGAACAGTGCTCAAACCCAAGTATATATCTCCACTGTTACTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAACAGGAGTCTTTTAACCCACAATTTAACGCCAAAAAAGTTAACAAGAGGAAACGAGCTACCGAATCGTCTCCTGATACGTGCAGCGCCATCGACGAAAACGAAGTGAAGGAGAAACTTTCAACAAGATTCTGTCTTCTCCGGGACATCAATGACAATCAGAGATTAAGGGCCGAATTGCACCGTACCTCTTCGTCTTTGCAGCTATACGAAGAATACAAAAGGCAAAAGAAAAAATCTAAAAAGTCCAGGAATATTTGA 2643 43.4 MLSDAAQWPFFRSLAAATVVLPFVAPQPPSLRWFERGGKNLSYLSPLQGGFRSAFAMGRKRNNEKQKVILPPELPPEITEEEIEVSDEDLQFVNENRDYAISVSSLDTQSITKHVTRVANVEEDALEALYEKRLRKKSLQKQEEENKVQVDRVDALPVKTLDGKLYYRTSKPSDAPENGANEEEVEEDQVDNGVLKLTKAERRAKQKKIKKVAKKQEDVTKAEEVQPTPQAAVVAEVVEDLTAEKTFESKKQKLAELGIALLADPNSNIKSLKEMLQIAKDNDQAIVKLGLLSLLAVFKDIIPGYRIRLPTEKELEMKVSKDVKKMRFYESTLLTAYKGYLQKLMSLEKLTSFQHVVIRCICTLLDAVPHFNFRETLIGIVVKNISSPDDVVRKLCCGAIKSLFINEGKHGGEATVEAVRLIAIHVKSHDCQLHPDSIEPFIYLTFDEDLGKAEKKDEHSKVKNKKHKKIKNREDSSHSQGNDGRQSMRTKFTEEVAADYRAATLAPDVMKQREMQSDTLSAVFETYFRILRHTMQSLSARPEASTTTSTTSPSGSHPLLAPCLNGLGKFSHLIDLDFMGDLMNYLKRLASGGDNSSEKQSQCLTVSERLQCCIVAFKVMRKNLDALNVDLQDFFVQLYNIVLEYRPGRDRGEVLAEALKIMLCDDRQHDMQKAAAFIKRLSTFSLCFGSAESLAALVTVKHLLLKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPNLSGALASVLWELDLLWKHYHPAVSTMAASISSMNSAQTQVYISTVTPQQAFKDLSLEQESFNPQFNAKKVNKRKRATESSPDTCSAIDENEVKEKLSTRFCLLRDINDNQRLRAELHRTSSSLQLYEEYKRQKKKSKKSRNI 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 620281 629408 + Lag0014424.1 Lac12g0052 588649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0052 880 Coils Coil 197 217 - -
Lac12g0052 880 PIRSF Noc3 59 877 IPR016903 -
Lac12g0052 880 SUPERFAMILY ARM repeat 272 663 IPR016024 -
Lac12g0052 880 Pfam CBF/Mak21 family 610 765 IPR005612 -
Lac12g0052 880 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 62 821 IPR016903 GO:0003682(PANTHER)|GO:0005730(PANTHER)|GO:0006270(PANTHER)
Lac12g0052 880 MobiDBLite consensus disorder prediction 455 488 - -
Lac12g0052 880 MobiDBLite consensus disorder prediction 168 191 - -
Lac12g0052 880 Pfam Nucleolar complex-associated protein 250 340 IPR011501 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0052 K14834 - - csv:101213821 1315.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1109 . . . . Bpe07g00465 . . . . . . . . . Sed04g3507 . . Bhi05g02013 Tan02g0055 Cmetu01g1246 Lac12g0052 Hepe02g0024 . . . . . . . . . . . . . . Csa07g01193 . . Blo15g00617 . . . . . . Bma12g00588 . . . . . . . Cpe15g00894 . . . . . . . . . . . . . . . . . Chy01g00870 Cme01g01521
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G14700 66.0 8.5e-260 894.0
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G12620 67.8 6.1e-266 914.4
Lac6g0338 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 7.3e-144 507.7
Lac11g1707 . 15 445 Core DNA Replication Machinery Family AT5G16690 53.0 3.3e-122 436.8
Lac13g1196 . 146 556 Core DNA Replication Machinery Family AT2G01120 63.4 3.2e-149 525.8
Lac13g2285 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 1.5e-94 343.6
Lac12g0052 . 61 854 Core DNA Replication Machinery Family AT1G79150 60.2 5.7e-251 864.8
Lac7g1551 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1345.5
Lac1g3505 . 93 642 Core DNA Replication Machinery Family AT5G46280 82.9 1.3e-262 902.9
Lac4g1433 . 1 845 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1183.3
Lac6g2877 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.1
Lac7g1919 . 9 358 Core DNA Replication Machinery Family AT2G07690 68.4 3.5e-132 469.9
Lac1g3681 . 1 832 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1191.8
Lac4g2531 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Lac9g2413 . 3 234 Core DNA Replication Machinery Family AT2G29680 65.1 9.3e-79 292.0
Lac12g1686 . 126 352 Core DNA Replication Machinery Family AT2G29680 55.1 1.5e-76 284.6
Lac12g1686 . 100 353 Core DNA Replication Machinery Family AT1G07270 53.1 1.5e-75 281.2
Lac9g2413 . 3 204 Core DNA Replication Machinery Family AT1G07270 65.8 1.6e-69 261.2
Lac4g1977 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.4 1.4e-259 892.9
Lac10g3047 . 12 781 Core DNA Replication Machinery Family AT3G09660 73.4 0.0e+00 1102.8
Lac12g0230 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.9 2.2e-287 985.3
Lac9g1824 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.2 1.9e-119 426.8
Lac2g0961 . 1 965 Core DNA Replication Machinery Family AT1G77320 51.0 2.4e-264 909.4
Lac4g2802 . 1 200 Core DNA Replication Machinery Family AT1G80190 69.5 7.7e-77 284.3
Lac3g3108 . 144 288 Core DNA Replication Machinery Family AT3G12530 73.8 7.5e-61 230.7
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.4e-69 259.2
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.4e-69 259.2
Lac7g0224 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 4.5e-50 195.3
Lac9g1232 . 1 677 Core DNA Replication Machinery Family AT5G67100 62.2 2.6e-262 903.3
Lac9g1235 . 1 803 Core DNA Replication Machinery Family AT5G67100 53.5 4.6e-214 743.0
Lac13g0083 . 4 622 Core DNA Replication Machinery Family AT1G67630 62.1 6.2e-218 754.6
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac2g2776 . 1 430 Core DNA Replication Machinery Family AT5G41880 64.8 4.3e-168 588.6
Lac1g2327 . 1 1084 Core DNA Replication Machinery Family AT5G63960 79.5 0.0e+00 1754.2
Lac10g2621 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.8 1.1e-205 713.4
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac9g2692 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2957.9
Lac10g0329 . 5 2043 Core DNA Replication Machinery Family AT1G08260 68.3 0.0e+00 2828.9
Lac9g2692 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2916.3
Lac10g0329 . 28 2156 Core DNA Replication Machinery Family AT2G27120 65.6 0.0e+00 2797.7
Lac3g2732 . 7 535 Core DNA Replication Machinery Family AT5G22110 60.2 1.1e-177 620.5
Lac4g1082 . 9 338 Core DNA Replication Machinery Family AT5G22110 61.7 6.0e-123 438.7
Lac9g2747 . 52 989 Core DNA Replication Machinery Family AT5G22010 61.6 3.3e-308 1055.0
Lac1g1062 . 196 391 Core DNA Replication Machinery Family AT5G22010 69.4 5.8e-71 266.9
Lac12g1394 . 81 200 Core DNA Replication Machinery Family AT5G22010 76.1 6.0e-52 203.8
Lac4g0414 . 216 351 Core DNA Replication Machinery Family AT5G22010 59.3 1.9e-42 172.2
Lac5g0598 . 1 334 Core DNA Replication Machinery Family AT1G63160 90.7 9.5e-173 603.6
Lac1g1629 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.6 1.2e-178 623.2
Lac2g0958 . 40 373 Core DNA Replication Machinery Family AT1G21690 81.5 5.4e-152 534.6
Lac8g1831 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.6e-155 545.8
Lac6g3094 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.4e-254 876.3
Lac5g0150 . 34 700 Core DNA Replication Machinery Family AT2G06510 52.1 1.9e-195 679.9
Lac3g0557 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 8.6e-249 857.1
Lac5g0150 . 10 809 Core DNA Replication Machinery Family AT5G45400 51.9 9.4e-225 777.7
Lac3g0557 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.9 1.5e-243 839.7
Lac5g0150 . 10 795 Core DNA Replication Machinery Family AT4G19130 55.1 6.6e-225 778.1
Lac3g3084 . 1 240 Core DNA Replication Machinery Family AT5G26680 92.1 2.0e-124 443.4
Lac3g3088 . 45 184 Core DNA Replication Machinery Family AT5G26680 76.4 8.2e-57 218.8
Lac7g0388 . 1 1119 Core DNA Replication Machinery Family AT1G08840 52.3 1.3e-297 1020.0
Lac7g0436 . 129 247 Core DNA Replication Machinery Family AT1G08840 72.5 3.0e-39 161.8
Lac7g1212 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 3.7e-114 408.7
Lac9g2623 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.5 2.6e-298 1021.9
Lac9g2623 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 2.0e-243 839.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005069 1 1 3 1 1 2 2 1 1 1 1 1 3 1 2 3 1 1 2 1 1 1 2 1 1 1 1 1 1 1 41