Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0054 ATGGCGTCTTCCTCTTTAGGTTTCGTCTTTGCTCTTTGTGTGATTGCTTCCATCGTCAGCCACCTGGTTGTTTTCTCTGAAGCTCAGAATTCAGCTCAACCCATCACTGATCCTGATGAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCGGCGCCATCAGGGGCGTGGAATATAAGTGGAAATCTATGCACTGGGAGAGCAGTCGACACTACCACCAGAGTCGACGTTGGTGGAAACCTCAATCCTCTTATAAAATGCGATTGCTCAGACGGAGTTACTTGCCACATTACTCAAATGCACGTTTATGCAATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACTTTAACATCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGTCCGGAACGCTATCTGCATCTGTTGGTAATCTCACACAATTACAAACCTTGAGCCTTGGAATTAATGCTTTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTACTAATCTGAAACTGTTGGCATTTGGGTCCAACAATTTCTCTGGTTCCTTACCACCAGAGCTTGGAAATCTTTCTATGTTGGAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGATATTCCTCCATCATTTTCAAATCTAAGAAACATGCGTATAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAATTGGACAAGGCTCACATCTTTGAGGTTTGAAGGAAACTCTTTTACAGGTCCCGTACCATCAACGTTTTCAAGCTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGAAGCTCTTCTCTGGCGTTCATAAGTAATATGAGATCTCTAACTCTACTGGTGTTGAGAAATAATAATATGTCAGGTTCAATTCCATCCAACATTGGAGAATTTCGCAACCTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAACAAGTTAACTGGGACGATACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCGTATAATGATTTATCAGGGAGCTTTCCTTCTTGGACCAACCAGCAAAACTTACAGCTAAATTTAGTTGCCAACAACTTCACAATTGATGGGTCAAGTAACAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGATCCTCCAATATATTCTAGTTTCGGAATTAAGTGTGGAGGTCCACAGATAACAAGTTCATCAAGGATTTTGTTTGAAAGGGAAGATGAGACTCTTGGTCCGGCTACGTACTTTGTTACTGAGTCAAATAGGTGGGCTGTTAGTAATACTGGATACTTTACTGGGTCCAACAATGCTCAATTCAAAGGCAACACGTTGTCTCAATTCTCAAACACCATTGATACAGAGCTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACCGTGAACCTTCAGTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGTCGTGGGAGGCGTGTCTTTGATATATATATCCAGGGAAATCGTGTCATACAGAATTTTGATATTAGAAGGGCAGCAGGTGGGTCTTTCCTTGCTGTTAGTAGGAGTTTTACGGCTGTAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTGCTCAGGGTACTTATGGACCCTCTATTTCGGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGTAATGTGCCTCCAAGTACGAAGGAGAATAATAGAACAGGCCTAATTGTCGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGTGCAGTTTTCATTGTCGTCCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGATGCTAGACCGTACACATTTAGTTTTTCTGAACTAAGGGGTGCTACAGAGGACTTTAATTCATCCAACAAACTTGGCGAAGGAGGATTTGGACCTGTTTACAAGGGAACACTAAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGTCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCGATAAACGTCTCCTGGTTTATGAGTTTCTTGAAAATAAGAGTCTAGACCAAGCATTATTTGAAAAAAAACATTTGGTTATCGATTGGCCAACACGTTTCGACATATGCGTCGGTGTAGCAAGAGGTCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTAAAGGCCAGCAACATTTTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACTCGTGTCGCCGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACAGAGAAGGCTGATGTCTTTGGATTTGGTGTTGTGGCTCTTGAAATTGTCAGTGGAAGACCAAATTCAGATCCAAGCTTAGAGCAAGACAAAGTTTATCTTCTTGAATGGGCATGGCACCTCCATGAAAACAACTGTGAACTTGAGATGGTGGATTCTGGATTATCAGAGTTCAACAAGGAGGAAGTGAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCGATGTCCCGTGTCGTGGCAATGCTGACGGGAGACATCGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATAATCCATCAACCGAAGAACCTGATACTGGCCGTTATGCATCTACAAGTTCGAGTATCGTTGATACAAATCGCTCGCCAATGAATGCTTCTGATCCAATGCTCCGTGGATTGATAGGGGAGGCTTGGACAATCTGGAACTATCAGAACAAAGTCTCCCTCAACAAGGAGAAGACAGACATCCAAACGCTCAAGAGATGGATCAAGAAAAATCTAGAAGAGCAGAAGAAAAGGGTGAGGAACATACCAAATCCCAGATTGGAGAGCCTCTGGAATCAGGAAGCTTGGACTCCCCCTCCACCGAATTGCCTGAAATTGAACGCAGATGCTTCATGGAATGAAGATCGAAAAATTGGCGGAATAGGGTGGATTATTCGTGATTCCTCAGGATGTCCAATTCAAGCGGGCTGCAGACAAATAAAGAGGAAATGA 3402 42.83 MASSSLGFVFALCVIASIVSHLVVFSEAQNSAQPITDPDEARALNSIFRQWRISAPSGAWNISGNLCTGRAVDTTTRVDVGGNLNPLIKCDCSDGVTCHITQMHVYAINVVGVLPPELWTLTSLTYLKLDQNFLSGTLSASVGNLTQLQTLSLGINALSGELPKELGSLTNLKLLAFGSNNFSGSLPPELGNLSMLEELYIDSSGVSGDIPPSFSNLRNMRIVWASDNEFTGRIPDFIGNWTRLTSLRFEGNSFTGPVPSTFSSLTSLTELRIGDLSNGSSSLAFISNMRSLTLLVLRNNNMSGSIPSNIGEFRNLTQLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLTGTIPTQKSASLLNIDLSYNDLSGSFPSWTNQQNLQLNLVANNFTIDGSSNSGLPSGLNCLQRNFPCNRDPPIYSSFGIKCGGPQITSSSRILFEREDETLGPATYFVTESNRWAVSNTGYFTGSNNAQFKGNTLSQFSNTIDTELFQTQRLSASSLRYYGLGLENGNYTVNLQFAEIAFPDSNTWQSRGRRVFDIYIQGNRVIQNFDIRRAAGGSFLAVSRSFTAVVTENFLEIHLFWAGKGTCCIPAQGTYGPSISAISATPDFEPTVSNVPPSTKENNRTGLIVGLVVGLGSVFFLIIGAVFIVVQRRKRRRAYEDEELLGIDARPYTFSFSELRGATEDFNSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKKHLVIDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWHLHENNCELEMVDSGLSEFNKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDNPSTEEPDTGRYASTSSSIVDTNRSPMNASDPMLRGLIGEAWTIWNYQNKVSLNKEKTDIQTLKRWIKKNLEEQKKRVRNIPNPRLESLWNQEAWTPPPPNCLKLNADASWNEDRKIGGIGWIIRDSSGCPIQAGCRQIKRK 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 648371 661763 + Lag0014426.1 Lac12g0054 588651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0054 1133 ProSiteProfiles Protein kinase domain profile. 694 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0054 1133 FunFam Putative LRR receptor-like serine/threonine-protein kinase 770 974 - -
Lac12g0054 1133 SUPERFAMILY L domain-like 100 398 - -
Lac12g0054 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 988 IPR051824 GO:0005886(PANTHER)
Lac12g0054 1133 SMART serkin_6 694 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0054 1133 FunFam Leucine-rich repeat receptor-like protein kinase 663 769 - -
Lac12g0054 1133 Gene3D - 426 614 - -
Lac12g0054 1133 Gene3D Ribonuclease Inhibitor 280 402 IPR032675 -
Lac12g0054 1133 MobiDBLite consensus disorder prediction 993 1017 - -
Lac12g0054 1133 CDD STKc_IRAK 700 964 - -
Lac12g0054 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0054 1133 FunFam Putative LRR receptor-like serine/threonine-protein kinase 279 402 - -
Lac12g0054 1133 SUPERFAMILY Protein kinase-like (PK-like) 678 995 IPR011009 -
Lac12g0054 1133 Pfam Malectin domain 427 610 IPR021720 -
Lac12g0054 1133 FunFam Leucine-rich repeat receptor-like protein kinase 424 614 - -
Lac12g0054 1133 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Lac12g0054 1133 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515(InterPro)
Lac12g0054 1133 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515(InterPro)
Lac12g0054 1133 ProSiteProfiles Leucine-rich repeat profile. 315 337 IPR001611 GO:0005515(InterPro)
Lac12g0054 1133 Gene3D Phosphorylase Kinase; domain 1 655 769 - -
Lac12g0054 1133 Gene3D Transferase(Phosphotransferase) domain 1 770 973 - -
Lac12g0054 1133 Pfam Protein tyrosine and serine/threonine kinase 697 961 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0054 1133 FunFam Os05g0263100 protein 41 278 - -
Lac12g0054 1133 Gene3D Ribonuclease Inhibitor 37 279 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0054 Lac-Chr12:648371 Lac2g1141 Lac-Chr2:9079483 5.50E-148 dispersed
Lac7g1518 Lac-Chr7:16635125 Lac12g0054 Lac-Chr12:648371 4.90E-11 dispersed
Lac8g1950 Lac-Chr8:37894642 Lac12g0054 Lac-Chr12:648371 6.90E-12 dispersed
Lac12g0054 Lac-Chr12:648371 Lac12g0056 Lac-Chr12:684116 8.50E-258 proximal
Lac12g0054 Lac-Chr12:648371 Lac12g0055 Lac-Chr12:661866 6.80E-122 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85775 PF07714 PK_Tyr_Ser-Thr 3.20E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0054 - - - 0.0