Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0056 ATGAGTCCAGTCGAGTACAAAATCCTACATGAACAAGTGCAAGAGCTTCTAGACAAAGGCCACATCAAGCCAAGTCTTAGCCCATGTGGTGTCCCAGCTCTTCTAACACCCAAACAAGATGGTACCTGGCGTATGTGTGTGGACAGTCGGGCAATCAATAAAATAACAGTGAAGTACAAATTCCCTATACCCAGAATCAACGACCTATTGGATCAATTAGGAGGAGCCATGGTCTTTTCGAAAGTAGACTTGAAGAGTGGATATCACCAAATTCGAATAAGGCTAGGAGATGAATGGAAAACTGCCTTCAAAACCAACAAAGGTCTTTTTGAATGGCTTGTCATGCCCTTTGGATTACCAAACGCCCCAATTAACCAAAAATCCCCTTACAATTTTGTTTATGCAGGAAATCGTGTTCTACAGAATTTTGATATTAGAAGGGCAGCAGGTGGATCTTTCCTTCCTGTTAATAGGAGTTTTACGGCTGTAGTTACAGAAAACTTCATGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTGATCAGGGTACTTATGGACCCTCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGAACCAACAGTCAGTAACATGCCTCCAAGTACTGAGGAGAATAATAGAATGGGCCTAATTGTCGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTACTGGTGCAGTTTTCATTGTCATCCAGAGAAGAAAAAGGTGTCGTGCCTATGAAGATGAAGAGCTCCTGGGAATAGATTCTAGACCGTACACATTTAGTTTTTCTGAACTAAGGGGTGCAACAGAGGACTTCAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGTCCTGTTTACAAGGGAACACTAAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAACTATATGGATGTTGCATTGAGGCCGATAAGCGTCTCCTTGTTTATGAATTTCTTGAAAATAAGAGTCTTGACCAAGCATTGTTTGAAAGAAGACATTTGATTCTTGATTGGCCAACACGTTTCGACATATGCGTGGGAGTGGCAAGAGGTCTCACTTACCTTCACGAGGAATCAAGACTTCGCATAGTACACAGAGATATAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAGATTTCAGATTTTGGCTTGGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCAGGGACTATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACTGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCGAATTCAGATCCAAGCTTAGAGCAAGACAAAGTTTATCTTCTCGAATGGGCATGGAACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTATAGCAAGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCGATGTCCCGTGTCGTGGCAATGCTGACTGGAGACATTGAAGTGGCTGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAGTTTTGATGACATAACAAGCTTTATAGATGATCCATCCACTGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCGATTGTTGTTGATACAGATAGCTCGCCAATCAGTGATTCTAAACCAATCCTCCGTGGATTATTAGGGGACGGTAGGTGA 1860 43.44 MSPVEYKILHEQVQELLDKGHIKPSLSPCGVPALLTPKQDGTWRMCVDSRAINKITVKYKFPIPRINDLLDQLGGAMVFSKVDLKSGYHQIRIRLGDEWKTAFKTNKGLFEWLVMPFGLPNAPINQKSPYNFVYAGNRVLQNFDIRRAAGGSFLPVNRSFTAVVTENFMEIHLFWAGKGTCCIPDQGTYGPSVSAISATPDFEPTVSNMPPSTEENNRMGLIVGLVVGLGSVFFLITGAVFIVIQRRKRCRAYEDEELLGIDSRPYTFSFSELRGATEDFNSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFERRHLILDWPTRFDICVGVARGLTYLHEESRLRIVHRDIKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWNLHENNCELEMVDSELSEYSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWSFDDITSFIDDPSTEEPDTGRYASTSSIVVDTDSSPISDSKPILRGLLGDGR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 684116 688267 + Lag0014428.1 Lac12g0056 588653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0056 619 ProSiteProfiles Protein kinase domain profile. 280 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0056 619 FunFam Leucine-rich repeat receptor-like protein kinase 249 355 - -
Lac12g0056 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0056 619 CDD RT_LTR 20 123 - -
Lac12g0056 619 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1 121 - -
Lac12g0056 619 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 37 124 IPR000477 -
Lac12g0056 619 FunFam Putative LRR receptor-like serine/threonine-protein kinase 356 560 - -
Lac12g0056 619 SUPERFAMILY DNA/RNA polymerases 1 142 IPR043502 -
Lac12g0056 619 MobiDBLite consensus disorder prediction 578 619 - -
Lac12g0056 619 SUPERFAMILY Protein kinase-like (PK-like) 263 581 IPR011009 -
Lac12g0056 619 SMART serkin_6 280 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0056 619 Gene3D Transferase(Phosphotransferase) domain 1 356 559 - -
Lac12g0056 619 Pfam Protein tyrosine and serine/threonine kinase 283 547 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0056 619 MobiDBLite consensus disorder prediction 585 606 - -
Lac12g0056 619 CDD STKc_IRAK 286 550 - -
Lac12g0056 619 Pfam Malectin domain 134 196 IPR021720 -
Lac12g0056 619 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 129 574 IPR051824 GO:0005886(PANTHER)
Lac12g0056 619 Gene3D Phosphorylase Kinase; domain 1 241 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0056 Lac-Chr12:684116 Lac2g1159 Lac-Chr2:9315876 9.10E-121 dispersed
Lac12g0054 Lac-Chr12:648371 Lac12g0056 Lac-Chr12:684116 8.50E-258 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85776 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0056 - - - 0.0