Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g0090 | ATGTCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGCGTCATGAACAACGACGGCCAGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGATGACGACGTTACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACCCTGGGGGGATGAGTGGCTCGGTCTCGGTGATGAACCGAGTCCAGGATATTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAACCCTTTAACTGGAAACGGTGGTGCCGACCAGCTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGATAAGGTGCAAGCTGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCGATGGCTTTCCTGTTAGGTCAGTTCAACCACAGAGAGCTGCTTCCTTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTAGATTCTGGACAAGATGATGGTTTGTTGGAAACTTCATGTACGCATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGCCGTGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGCATTCAGGAATCTTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCTAACGAATCCGATGCTGCAATCAATGTGGATATTCTCACTTCTAATGGTGATAAATAG | 921 | 47.99 | MSDSNFQDAMYGSGVMNNDGQDLDNIQNRVGDEDDDVTGGEESIDNPQMRFEDPGGMSGSVSVMNRVQDIVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQESSVKETEQSDGEANESDAAINVDILTSNGDK | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1045120 | 1048870 | + | Lag0014462.1 | Lac12g0090 | 588687 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g0090 | 306 | Pfam | tify domain | 90 | 120 | IPR010399 | - | |
| Lac12g0090 | 306 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 36 | 301 | IPR045280 | GO:0006355(InterPro) | |
| Lac12g0090 | 306 | ProSitePatterns | GATA-type zinc finger domain. | 225 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac12g0090 | 306 | ProSiteProfiles | CCT domain profile. | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
| Lac12g0090 | 306 | ProSiteProfiles | Tify domain profile. | 86 | 121 | IPR010399 | - | |
| Lac12g0090 | 306 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 222 | 271 | - | - | |
| Lac12g0090 | 306 | Gene3D | - | 221 | 286 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
| Lac12g0090 | 306 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Lac12g0090 | 306 | ProSiteProfiles | GATA-type zinc finger domain profile. | 224 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac12g0090 | 306 | MobiDBLite | consensus disorder prediction | 273 | 306 | - | - | |
| Lac12g0090 | 306 | Pfam | CCT motif | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
| Lac12g0090 | 306 | CDD | ZnF_GATA | 224 | 279 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac12g0090 | 306 | SMART | tify_2 | 86 | 121 | IPR010399 | - | |
| Lac12g0090 | 306 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Lac12g0090 | 306 | SMART | GATA_3 | 219 | 272 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac12g0090 | 306 | Pfam | GATA zinc finger | 225 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0090 | Lac-Chr12:1045120 | Lac6g0994 | Lac-Chr6:9064462 | 1.50E-63 | dispersed | |
| Lac12g0090 | Lac-Chr12:1045120 | Lac10g0096 | Lac-Chr10:742038 | 6.30E-06 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23004 | PF06203 | CCT | 8.10E-16 | CL0281 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g0090 | - | - | - | 0.0 |