Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0090 ATGTCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGCGTCATGAACAACGACGGCCAGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGATGACGACGTTACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACCCTGGGGGGATGAGTGGCTCGGTCTCGGTGATGAACCGAGTCCAGGATATTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAACCCTTTAACTGGAAACGGTGGTGCCGACCAGCTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGATAAGGTGCAAGCTGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCGATGGCTTTCCTGTTAGGTCAGTTCAACCACAGAGAGCTGCTTCCTTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTAGATTCTGGACAAGATGATGGTTTGTTGGAAACTTCATGTACGCATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGCCGTGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGCATTCAGGAATCTTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCTAACGAATCCGATGCTGCAATCAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 921 47.99 MSDSNFQDAMYGSGVMNNDGQDLDNIQNRVGDEDDDVTGGEESIDNPQMRFEDPGGMSGSVSVMNRVQDIVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQESSVKETEQSDGEANESDAAINVDILTSNGDK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1045120 1048870 + Lag0014462.1 Lac12g0090 588687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0090 306 Pfam tify domain 90 120 IPR010399 -
Lac12g0090 306 PANTHER GATA TRANSCRIPTION FACTOR 28 36 301 IPR045280 GO:0006355(InterPro)
Lac12g0090 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Lac12g0090 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Lac12g0090 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Lac12g0090 306 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac12g0090 306 MobiDBLite consensus disorder prediction 1 52 - -
Lac12g0090 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 MobiDBLite consensus disorder prediction 273 306 - -
Lac12g0090 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Lac12g0090 306 CDD ZnF_GATA 224 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 SMART tify_2 86 121 IPR010399 -
Lac12g0090 306 MobiDBLite consensus disorder prediction 1 25 - -
Lac12g0090 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0090 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0090 Lac-Chr12:1045120 Lac6g0994 Lac-Chr6:9064462 1.50E-63 dispersed
Lac12g0090 Lac-Chr12:1045120 Lac10g0096 Lac-Chr10:742038 6.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac12g2249 . 1 181 Tify Gene Family AT4G14713 53.1 4.1e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23004 PF06203 CCT 8.10E-16 CL0281 Lac TF