Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0090 ATGTCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGCGTCATGAACAACGACGGCCAGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGATGACGACGTTACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACCCTGGGGGGATGAGTGGCTCGGTCTCGGTGATGAACCGAGTCCAGGATATTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAACCCTTTAACTGGAAACGGTGGTGCCGACCAGCTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGATAAGGTGCAAGCTGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCGATGGCTTTCCTGTTAGGTCAGTTCAACCACAGAGAGCTGCTTCCTTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGCAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTAGATTCTGGACAAGATGATGGTTTGTTGGAAACTTCATGTACGCATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGCCGTGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGCATTCAGGAATCTTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCTAACGAATCCGATGCTGCAATCAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 921 47.99 MSDSNFQDAMYGSGVMNNDGQDLDNIQNRVGDEDDDVTGGEESIDNPQMRFEDPGGMSGSVSVMNRVQDIVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAIADEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQESSVKETEQSDGEANESDAAINVDILTSNGDK 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1045120 1048870 + Lag0014462.1 Lac12g0090 588687
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0090 306 Pfam tify domain 90 120 IPR010399 -
Lac12g0090 306 PANTHER GATA TRANSCRIPTION FACTOR 28 36 301 IPR045280 GO:0006355(InterPro)
Lac12g0090 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Lac12g0090 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Lac12g0090 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Lac12g0090 306 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac12g0090 306 MobiDBLite consensus disorder prediction 1 52 - -
Lac12g0090 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 MobiDBLite consensus disorder prediction 273 306 - -
Lac12g0090 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Lac12g0090 306 CDD ZnF_GATA 224 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 SMART tify_2 86 121 IPR010399 -
Lac12g0090 306 MobiDBLite consensus disorder prediction 1 25 - -
Lac12g0090 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0090 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0090 Lac-Chr12:1045120 Lac6g0994 Lac-Chr6:9064462 1.50E-63 dispersed
Lac12g0090 Lac-Chr12:1045120 Lac10g0096 Lac-Chr10:742038 6.30E-06 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23004 PF06203 CCT 8.10E-16 CL0281 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0090 - - - 0.0