Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0096 ATGTTGCGGTTTTCGATTCGGCGAGTGAGGAAATCGAGTGTTCTGCGGCCTCAGATCTTTGCTCTCGGAAATCCTCGTTTCTCCACCTTCCCTGAGCCGTCTTCTTCCAAGCCTAATCCTCCGAGAGTTCCAAATCTCATAGGAGGGAATTTTGTTGATTCTCAATCCTCAGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACGACAAACGAAGAATTTAAAGCTGCGGTATCTTCAGCAAAGCAAGCTTTTCCTGCATGGCGTAATACCCCAGTTACAACTCGTCAACGGATAATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATGGACAAACTTGCTCTAAATATCACCACAGAACAAGGAAAAACATTAAAGGATGCACAGGGAGATGACTTATCTTATGCAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAATATGTCTCTAATGTATCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCATTTAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGAGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCGAATGGTGTCCTAAATGTGGTTCATGGCACTAATGATGTTGTTAATGCCATTTGTGATGATGATGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTGCTTTGAATGCTTTGGTTGCTGCTGGTTTCGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAAGCTACTGCTCGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACACCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTAGAGGAAGCCATTAGCATCGTTAACGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATTGCAGCGAGGAAGTTCCAAACAGATATCGAAGCTGGACAGGTCGGGATCAACGTTCCAATTCCCGTTCCCTTACCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGAGTTAACTTCTTCACTCAGATCAAAACAGTGACACAACAATGGAAAGACTCACCTGGGGGAACTGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1617 44.28 MLRFSIRRVRKSSVLRPQIFALGNPRFSTFPEPSSSKPNPPRVPNLIGGNFVDSQSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSSAKQAFPAWRNTPVTTRQRIMFKLQELIRRDMDKLALNITTEQGKTLKDAQGDDLSYAEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDDDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDAALNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVNSGTEPDADLGPVISKQAKERIHRLVQSGIDSGAKLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSPGGTAVNLAMPTSLKS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1123321 1131313 - Lag0014468.1 Lac12g0096 588693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0096 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620(InterPro)
Lac12g0096 538 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
Lac12g0096 538 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491(InterPro)
Lac12g0096 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491(InterPro)
Lac12g0096 538 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Lac12g0096 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 8 535 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lac12g0096 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491(InterPro)
Lac12g0096 538 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491(InterPro)
Lac12g0096 538 SUPERFAMILY ALDH-like 38 520 IPR016161 GO:0016491(InterPro)
Lac12g0096 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0096 Lac-Chr12:1123321 Lac1g2767 Lac-Chr1:48807735 1.80E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0096 K00140 - csv:101204924 985.711