Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0105 ATGGCGTCCGCTGTTTTAGCGAATCGAAACAACGAACCCAGTTGGCCGACGAGCAAACGCAACGGCGGCGGCGGTGGAGGAGGAGGAGGAGGAGGAGCGTTTATGGCAAGAGTACCGTTCTCAAACCCTAAATCTAAACCTAATATGAAAAAGAGGAAAATTAATGTTGAAATTAACAACTTCCACCAGATGGGTGAAGAACTGGCCAACGTAACAACTCTATCTCCCTCGGATGACGGGTCTTCTATCGATCGTCACCATGGATCTTCGAACTCTGAGTACAATCAATATGTGAGTTTCAATATAGCTTCGTGTTCTGGGAGGGATTTGGTTGAGCTGAAGAAACGTTTACTGGGGGAGCTCGAACAAGTTAGGCGAATCAAGAATCGCATTGAATCTGGTGACATTGGTTTTGGACCTAATTATTTCAAGAAATCGTCCAAGAGCAAGGGGATTAACAAGCGGCCGAAGCCACTCCCCAGTTTGGGCAGAGATTTGCAGGTTTCGAATTTGTTTGAAGTTGGGAATCTGATGAAGACTTGCTCTCAAATCTTGAACAAGTTGATGAAGCAGAAGTATGGGTTGATCTTCAACAAGCCGGTGGATGTGGTGGGGCTGGGTCTTCATGACTATTATGATATCGTTAAGCATCCTATGGATTTAGGGACTGTAAAATCTAAACTGGCAAAGAATTCATATGACTCACCGTTGGACTTTGCTGATGATGTTAGGCTAACCTTTAACAATGCCATGATGTACAATCCCAAAGGTCATGATGTCCATGTCCTGGCTGAGCAATGGTTGGTAAAATTTGAGGAATTGTTTCGCCCTGTTAGTGATAAGTTAGGTGATCCGAAGCAGCCAGATCTATATGATGAGGAATTGCAAGCCAGTTCTTGGAATCATGTAGAGCAGGTGGAGAAGGTGAACTTCAACTCAAATGGGAGCAAATTAGAGGAAGTTAGAGTGCCATCAAGCTCATCAAAACCGCCTTCGATACAGTCACCAGTGAAAACCCCATCACCAGTGAGGGCTCCACAGGTGAAGCCTGTAAGGCAGCCAAAGCCAAAGGCGAAGGATCCCAACAAAAGGGAGATGAGTTTGGAGGAGAAACACAGATTGGGAGTTGGATTGCAGGGCTTGCCTCCCGAGAAAATGGATCAGGTGATACAGATTGTGAAGAAGAGGAGTGGGCATTTGAGGCAGGATGGGGATGAGATTGAGCTTGACATTGAAGCAGTCGATACAGAGACCCTTTGGGAACTTGACCGGCTGGTGACAAATTGGAAGAAAATGATGAGCAAGGTCAAGCGGCAAGCTCTCTTCAATGACAATGCAAATGCGGATTTGAGTAAAGCGAATGAGTTATCCTCTGCAAATGAGACGAATGAGGTTAAAACAGAGTCGAAGAAGCTTAGAAAAGGAGATGTGGGTGAGGAAGATGTGGACATTGGGGATGAGACAATGCCAATGGGTGGTTTCCCTCCTGTTGAAATTGAAAGAGATGCAGCTGCCCATGCTAGCAGTAGTTCGGATAGCTCAAGTAGTTCAGGGAGTGATGATTCCTCCTCCTCAAGTGGTTCCGATTCAGAAGGTAGCTCCTCTGACAGTGACTCAGACGGTGATGGTCAATCATAG 1638 45.91 MASAVLANRNNEPSWPTSKRNGGGGGGGGGGGAFMARVPFSNPKSKPNMKKRKINVEINNFHQMGEELANVTTLSPSDDGSSIDRHHGSSNSEYNQYVSFNIASCSGRDLVELKKRLLGELEQVRRIKNRIESGDIGFGPNYFKKSSKSKGINKRPKPLPSLGRDLQVSNLFEVGNLMKTCSQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIVKHPMDLGTVKSKLAKNSYDSPLDFADDVRLTFNNAMMYNPKGHDVHVLAEQWLVKFEELFRPVSDKLGDPKQPDLYDEELQASSWNHVEQVEKVNFNSNGSKLEEVRVPSSSSKPPSIQSPVKTPSPVRAPQVKPVRQPKPKAKDPNKREMSLEEKHRLGVGLQGLPPEKMDQVIQIVKKRSGHLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKVKRQALFNDNANADLSKANELSSANETNEVKTESKKLRKGDVGEEDVDIGDETMPMGGFPPVEIERDAAAHASSSSDSSSSSGSDDSSSSSGSDSEGSSSDSDSDGDGQS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1210651 1212493 - Lag0014477.1 Lac12g0105 588702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0105 545 Coils Coil 110 130 - -
Lac12g0105 545 Pfam Bromodomain 181 265 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 ProSiteProfiles Bromodomain profile. 189 261 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 MobiDBLite consensus disorder prediction 1 48 - -
Lac12g0105 545 MobiDBLite consensus disorder prediction 464 480 - -
Lac12g0105 545 PRINTS Bromodomain signature 192 205 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 PRINTS Bromodomain signature 208 224 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 PRINTS Bromodomain signature 224 242 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 PRINTS Bromodomain signature 242 261 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 PANTHER OSJNBA0053K19.4 PROTEIN 56 539 - -
Lac12g0105 545 Pfam Bromodomain extra-terminal - transcription regulation 365 427 IPR027353 -
Lac12g0105 545 SMART bromo_6 170 280 IPR001487 GO:0005515(InterPro)
Lac12g0105 545 MobiDBLite consensus disorder prediction 315 341 - -
Lac12g0105 545 ProSiteProfiles NET domain profile. 356 437 IPR027353 -
Lac12g0105 545 MobiDBLite consensus disorder prediction 353 368 - -
Lac12g0105 545 MobiDBLite consensus disorder prediction 315 368 - -
Lac12g0105 545 MobiDBLite consensus disorder prediction 1 18 - -
Lac12g0105 545 MobiDBLite consensus disorder prediction 453 545 - -
Lac12g0105 545 Gene3D - 166 282 IPR036427 GO:0005515(InterPro)
Lac12g0105 545 MobiDBLite consensus disorder prediction 506 545 - -
Lac12g0105 545 Gene3D - 359 436 IPR038336 -
Lac12g0105 545 SUPERFAMILY Bromodomain 172 281 IPR036427 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0105 Lac-Chr12:1210651 Lac12g0792 Lac-Chr12:8263897 2.60E-55 dispersed
Lac12g0105 Lac-Chr12:1210651 Lac5g2650 Lac-Chr5:44973063 3.00E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80