Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0113 ATGGGCTTTTCCATTCTCCGAATTTCCCCTCTCTCTTCCTCTCGAGCTTTACTCTGTACTTCCACGCCCAACCTTCGGCTGCCTCTGCATTCATCGCCTTCTTCGCTCTTGAAAGCCCATTTCGGATCACCTTCTTCAGTGAATCCTAGCTCTTTCGCCATTTCTGCAACTCGATTCGGTGGGGCTTCTGCTCTGAGACCTCGTAGCTTCCGTCCAGGCCGTGTTTTGGCTATGTCTTCGCCTAATTCGGTCCAGAAATCGGAGGAGGAGTGGCGAGCCATCCTCTCGCCGGAGCAGTTTCTAATTCTCCGGCAGAAAGGAACGGAGTATCCAGGAACTGGTAAATATGATAAGTTCTATGGTGAGGGAGTTTATCACTGTGCGGGATGTGAGGCCCCCCTTTATCGGTCGAACACGAAATTCAACTCCGGTTGTGGTTGGCCAGCTTTCTTCGATGGTATTCCTGGAGCCATTAAACGCACGCCTGACCCTGATGGGATGAGGACTGAGATCACATGTGCTGCTTGTGGTGGTCATCTGGGTCATGTTTTTAAAGGAGAAGGCTTTCCAACACCCACAAATGAGCGCCATTGTGTCAATAATTTTCCCTCTCTCTATTTCCATTGTCCTCTTTCGGATGAGCATTGGATTGCATGTCCGATTGCACCAATTGCCATGGCCGTAGAAATGGACACACGTTCTGGGTTTGTCGTTAAACTTGCAAATGTTGATTACTGTATTCAAATTGGGTGTATTGGATTCGTGAGTTTAGGCACTATGTTGGAACCGGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGTAGTCAAACAGAAAAATCCTTTCAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCCTCAACTTACACTCGAAGAAAGTGGCTGTTCCTCTATGCACTATAAATTGCTGGAGGAATGATTATTCTTTAGTTCCTGTACTTTTCCACAACAGTGCTACCACGTTAGTGTCCAAAGTAGTTGGACGGAATGGATACATTTGGTCTAATCATAGGCCTAAACAGAGGGAAAGATTAAGTACGCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCTTAGCTGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAAGCTAGCCCTATACTCGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGTGTGATTAGAAATCTTATAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCTAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAGGTCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCTATTGTGATTGGTGCCGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGCTCGGCAACTCTAGGGATACTACTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCCGTTCTTGAGAGCCAGACTTTGGGCACAGAAAGTATCTGGCCAATGCTAGCGCAAGAAAGTTTGAAGGCTTTAGGTGGATTGGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTTGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACAGTTGCTGGCACTTCACTAATCACTCAGAAGTTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCGATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCAGATATTAGGCCATTTAGGGGTTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATGCAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCGGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTGGGCCTCACTATTCAAGAAAGTGTGAGAATAGGATTTCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCTCTAGCTAACAGGCTGGGAGTGCTACCACTTGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGTAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACGGTGAATTTTGACGCTACTGAACCCGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTCTTGGCGAATTTCTTATCTACACCTTTGGTGTCTGGGGTAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATCGATCTTTCCGTAGTGAAGAGATCGAGAAAACTTGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCTGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACGATTGAGGCTGTTCAGAAGCTCCGGCTTGCTTTCCCAGCGATCCCAATTTATGCCCGAGCTAAGGACGTCGTGCATCTACTAGATTTAAAGAATGCAGGTGCGACAGACGCTATTCTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCTAAGCTTTTGAAAGGGCTCGGCGTCATGTCTGACCAAGTGTCTTTCCTAAGTCAGATGGTTCGCAACTCTATGGAAATACAAGCTCAAGATGCACTTGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCGCTGCAGATACGCGTCAAGGACTCAATCGAGTCCCCCGAGAACGAACTGTCGAGGCTGAACCAGGAAGATAATACTCAGATCTTAAATGGCAAAGAAATGGATCAAAGGAAGCAAGATACTGTTTTCCAGAAGCCTGAAGATTTAGATGGAAATGGAGTCCTATACTGTGAACTTGATACAGAGGACAACTTTTTAGAGCAAAATGTGGTAGAGTCCCCAACCCCTTGCATAACAGCCACTGATGAGGTTTAG 3186 45.2 MGFSILRISPLSSSRALLCTSTPNLRLPLHSSPSSLLKAHFGSPSSVNPSSFAISATRFGGASALRPRSFRPGRVLAMSSPNSVQKSEEEWRAILSPEQFLILRQKGTEYPGTGKYDKFYGEGVYHCAGCEAPLYRSNTKFNSGCGWPAFFDGIPGAIKRTPDPDGMRTEITCAACGGHLGHVFKGEGFPTPTNERHCVNNFPSLYFHCPLSDEHWIACPIAPIAMAVEMDTRSGFVVKLANVDYCIQIGCIGFVSLGTMLEPVSCCQSSQSQIYSVVKQKNPFRAYSHTVHQLCGPSLNLHSKKVAVPLCTINCWRNDYSLVPVLFHNSATTLVSKVVGRNGYIWSNHRPKQRERLSTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLIDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQTLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTIQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLVSGVDGNTPGWPYVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIEAVQKLRLAFPAIPIYARAKDVVHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLNQEDNTQILNGKEMDQRKQDTVFQKPEDLDGNGVLYCELDTEDNFLEQNVVESPTPCITATDEV 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1274695 1292530 + Lag0014485.1 Lac12g0113 588710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0113 1061 FunFam Glutathione-regulated potassium-efflux system protein KefB 795 967 - -
Lac12g0113 1061 SUPERFAMILY Mss4-like 84 202 IPR011057 -
Lac12g0113 1061 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 86 201 IPR002579 GO:0033743(InterPro)
Lac12g0113 1061 Gene3D - 797 967 - -
Lac12g0113 1061 Coils Coil 954 974 - -
Lac12g0113 1061 Gene3D - 374 774 IPR038770 -
Lac12g0113 1061 MobiDBLite consensus disorder prediction 1007 1022 - -
Lac12g0113 1061 Pfam SelR domain 90 202 IPR002579 GO:0033743(InterPro)
Lac12g0113 1061 Pfam TrkA-N domain 798 921 IPR003148 GO:0006813(InterPro)
Lac12g0113 1061 ProSiteProfiles RCK N-terminal domain profile. 797 929 IPR003148 GO:0006813(InterPro)
Lac12g0113 1061 Gene3D Peptide methionine sulfoxide reductase. 74 209 - -
Lac12g0113 1061 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 325 999 - GO:0009507(PANTHER)|GO:0016020(PANTHER)
Lac12g0113 1061 Pfam Sodium/hydrogen exchanger family 385 766 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lac12g0113 1061 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 88 209 IPR002579 GO:0033743(InterPro)
Lac12g0113 1061 FunFam K(+) efflux antiporter 3, chloroplastic 374 773 - -
Lac12g0113 1061 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 797 935 IPR036291 -
Lac12g0113 1061 MobiDBLite consensus disorder prediction 990 1023 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0113 Lac-Chr12:1274695 Lac7g0255 Lac-Chr7:1996328 1.50E-91 dispersed
Lac12g0113 Lac-Chr12:1274695 Lac6g0195 Lac-Chr6:1516352 8.20E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0113 K03455 - csv:101209266 1356.66