Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0121 ATGGCTTCGTCTGAGATTGAGGTCGTATCATCACCCGACTCGAAATCTCAGACAAACCCTGAAGTTTCCATTGTAGATGTCTACTCTGCTTGTGCTTATGGCGACTTCCAGAAAGTGAGGAGTTTTGTTGAAGAGGATGGAGCTTCTCTTTCGGTTCCCGATTCCAATGGGTACTATGCTCTGCAATGGGCTGCTCTAAACAACTTCCCTGACATCGTGCAGTACATCATCGAGCATGGAGCGGATGTCAATTCCTCTGACAAATTGCAGCAGACGGCGCTTCACTGGGCAGCCGTTCGGGGTTCAATTATGGCTGCTGACATTGTCCTGCTGAATGGAGCTCGAGTGGAGACAACTGATATAAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATACGGACAAACTGCATTCTTGAATCACATTGTTGCCAAATTCCATGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGATTTGCAGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGAAAGACAAGATAAAGAAGGCTGTACCCCTTTGCATTGGGCTGCAATAGGAGGACATGTGGAGGCATGCACCGTTCTTGTGCATACAGGAACAAAGCAAGAATTATTGATCAAGGACAATGCCGGCTATACACCTTTTCAGCTTGCATCTGATAAAGGTCATCAGCAAATTGCTCATTTCCTTTCTAAAGCACAACGGACACATCACAGCCACTTGGGAGCAAAATTTTGTACTAGGAAGATTGAAAATTTTGGTTATGCCCCTATTTTACTATGTGTCATCATCCTTCTCGTGATCCTCTTCATCAATTCAGTTCTTGCAGGCTCTAATCTTGCAAAGGTTACTGCTGTTATTGGACTTTGGGCGTGGACTGCCCTCTGTTTGGCATTTGTTTCTCTGATAATGTTTTATAGGTGTAGTAGGTAA 975 44.41 MASSEIEVVSSPDSKSQTNPEVSIVDVYSACAYGDFQKVRSFVEEDGASLSVPDSNGYYALQWAALNNFPDIVQYIIEHGADVNSSDKLQQTALHWAAVRGSIMAADIVLLNGARVETTDINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQERQDKEGCTPLHWAAIGGHVEACTVLVHTGTKQELLIKDNAGYTPFQLASDKGHQQIAHFLSKAQRTHHSHLGAKFCTRKIENFGYAPILLCVIILLVILFINSVLAGSNLAKVTAVIGLWAWTALCLAFVSLIMFYRCSR 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1338596 1342257 + Lag0014493.1 Lac12g0121 588718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0121 324 ProSiteProfiles Ankyrin repeat region circular profile. 156 188 - -
Lac12g0121 324 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Lac12g0121 324 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Lac12g0121 324 Gene3D - 142 249 IPR036770 -
Lac12g0121 324 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 Pfam Ankyrin repeats (3 copies) 30 120 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 Pfam Ankyrin repeats (3 copies) 184 246 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 21 323 - GO:0000139(PANTHER)|GO:0016409(PANTHER)|GO:0018345(PANTHER)
Lac12g0121 324 FunFam S-acyltransferase 143 251 - -
Lac12g0121 324 Gene3D - 6 141 IPR036770 -
Lac12g0121 324 SMART ANK_2a 56 85 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SMART ANK_2a 156 185 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SMART ANK_2a 89 118 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SMART ANK_2a 224 253 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SMART ANK_2a 189 218 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SMART ANK_2a 122 152 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 SUPERFAMILY Ankyrin repeat 28 246 IPR036770 -
Lac12g0121 324 ProSiteProfiles Ankyrin repeat profile. 189 213 IPR002110 GO:0005515(InterPro)
Lac12g0121 324 FunFam S-acyltransferase 12 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0121 K20032 - - csv:101206919 592.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0121 Lac-Chr12:1338596 Lac6g2888 Lac-Chr6:46516885 2.30E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37