Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0126 ATGGAGACATCATCTATGGTGGTTTTTTCTGATATGGGAATGGAGGATTGTGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGCATACTCCCATTAGCAGCAGCTTTTGGGGATAATTTGCAGCATTCTTATGCTCAGACAAACCTTGACCAGAAAGCTTCTTCAAACAATTCTCACAATGCCATGTTTGGGTATGTGAAACAGCTCAAAACTGATGGGTGGAGTTCATACCAAGCAACTAATCATTTGCCAAACTCACAAGTCGTTGCTTATCCGACTGCGTCTGTTTCGGCTTCCAACTACACGAACCAAATGGACTTCGCTAGGCCGAAAGAGGAGGTTGTGTGTCCTCAGAGTATCAGCAACCTCCCTTCTGATATGTTGATTTCTCAGGGCTCATTACGCCACCAAAGCCAAGTAACCAAGTCCTACCGTGGAACGAAAAGAACCGCTACTAACGGTAGATTCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAAGCGGCGTGAGAAGCTCAGCCAGCGGTTTATTGCTCTGTCTGCTATAGTTCCTGGCCTTAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATCAAATACCTGAAACAACTGCAAGAGAAAGTGAAGATACTAGAGGAGCAAACCCGAAAGAAAGAAATCGAATCCGTGGTGTTTGTCAAGAAATCCCAAGTTTCCACTGATGGAAACAACACATCTAGAGAGGCGGACGAGCCACTTCCCGAGATCGAAGCAAGATTTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAGGAAAGATGTCCTAGAGAAGACAATTACTGAAATTGAAAAGTTGCACCTAACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTTGACATAACCATCATTGCTCAGATGGATAACGAATTCAGTTTGTCGCTAAAGGACCTCGTGAAGAAGTTGCAGTCGACATTCGCCTCGTTCCAATGA 1008 44.64 METSSMVVFSDMGMEDCGFVNQWHKSSMDELGILPLAAAFGDNLQHSYAQTNLDQKASSNNSHNAMFGYVKQLKTDGWSSYQATNHLPNSQVVAYPTASVSASNYTNQMDFARPKEEVVCPQSISNLPSDMLISQGSLRHQSQVTKSYRGTKRTATNGRFPQAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRKKEIESVVFVKKSQVSTDGNNTSREADEPLPEIEARFCDKNVLIRIHCEKRKDVLEKTITEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFSLSLKDLVKKLQSTFASFQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1380366 1382054 + Lag0014498.1 Lac12g0126 588723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0126 335 Coils Coil 200 227 - -
Lac12g0126 335 PANTHER BHLH TRANSCRIPTION FACTOR 12 331 IPR052610 -
Lac12g0126 335 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Lac12g0126 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983(InterPro)
Lac12g0126 335 CDD bHLH_AtNAI1_like 163 235 - -
Lac12g0126 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Lac12g0126 335 Gene3D - 161 233 IPR036638 GO:0046983(InterPro)
Lac12g0126 335 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0126 Lac-Chr12:1380366 Lac1g2735 Lac-Chr1:48537806 3.90E-49 dispersed
Lac9g2200 Lac-Chr9:41455629 Lac12g0126 Lac-Chr12:1380366 8.90E-06 dispersed
Lac12g0126 Lac-Chr12:1380366 Lac5g1857 Lac-Chr5:36810156 4.10E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23005 PF00010 HLH 4.10E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0126 - - - 0.0