Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0128 ATGACTAATTCACCCAATCCTCCACCACTTCCCACCCCCCGCCGCCGCCCTCCTCCGGTGGCTCTCCGCCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGTTCTCTTCCCATCTCCCATGGCGATGAACTTCAGCCACTTCTGGACCTCAAGGCTGCCCTCCACCAGAACTCAACCTCCTCCTCCTCCTCTCTGGTTTTCAGCTCTTGGATTAGTGGGAAAGATGTTTGCAGCAGCTTCCATGGCATTGTTTGTGATTCTAATGGGTCTGTTCTGGAAATCAATCTCTATGCTCAGAACTTATCTGGGGTTCTTCCTTTTGATTCCATTTGCTCTTTGAAATCTCTTGAGAGGCTGTCTTTTGGGTTGAATTCCTTGTATGGGAAGGTCACTGATGGCTTTAGGAACTGTTCCAGGTTGAAGTATTTGGATTTGAGTCAGAATTCATTCTCTGGTGAAGTGCCTGACTTGTCTTCTTTAGGAGGATTGAGGTTCTTGAGTTTGAATCAAAGTGGGTTTTCTGGGGATTTCCCTTGGAAATCTCTGCTGAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGACAATTCATTTAACCCAACAAGTTCATTCCCTTCAGAGATTCTTGAGCTTAAGAAGCTTCATTGGCTTTACCTCTCTAATTGCAGCATTCATGGAGAAATCCCACCTGGGATTGGGAATCTCTCTCTGCTTGAGAATCTTGAGCTCTCACAGAATGAACTTACAGGTGACATTCCTTCTGAGATTGTGAACCTGCAGAAGCTATGGCAGCTGGAGTTGCATGAGAATTCCTTGACCGGGAAGCTTCCGGTCGGGTTCCGTAACCTCACTGGATTGAGGAAGTTTGATGCCTCATCTAATAATCTTGAAGGTGATCTGATGGAGTTGAGGTTCTTGACCAATGTGGAGTCCTTGCAGCTCTTTGAAAACCGATTTTCCGGTACGATACCGGAGGAGTTTGGGGACTTCAAAGAGCTTGTTGGTCTCTCTCTTTACCAGAACAAGCTCACTGGCAGCCTCCCTCAAAAGATTGGATCTTGGGCAGCCTTTGAGTTCATTGATGTTTCAGAGAACTTCCTAACTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAGTATGACTCGTCTCTTGATGCTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACACCAACTGTAAATCTTTGAATCGGTTTCGTGTAAACAATAACTCTCTTTCGGGCGTCGTTCCATCTGGGATTTGGAGTCTGCCAAATCTTAGCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCAGATATTGGTAAAGCAAAAGCTCTTGCCCAGTTACTCTTATCGAATAACCGGTTTTCTGGAAACTTACCGGCTGAGCTTGGCGAAGTATCGTCTTTAGTCTCAATCCAGCTTGAATCGAACCAATTCGTTGGTCCAATACCAGAATCACTTGGCAAGTTGAAGGACTTGAGCAGCATTTCTTTGAATGACAACAAGTTTTCTGACAACATACCAAGCTCATTAGGCTCTTGCATTTCTCTTTCTACCATAAATCTAGCTATGAATTCGTTCTCCGGGCATATTCCGGAGAATCTTGGATACTTGCCAATTCTAAACTCGTTGAATCTGTCGAACAATGAACTTTCAGGCGAAATTCCAATAAGTTTTTCGCAGTTGAAGCTAAGCAGTTTCGACCTGTCTAATAATAGGTTAATTGGCCAAGTACCTGAATCCCTAGCAATCCAAGCCTTTGATGAAAGTTTCATGGGGAATCCAGGCTTGTGTAGTGAGTCTCTCAGATACTTGAGTTCATGTTCATCAACCTCTAGATCATCCAGCCATCTCAAAACGTTGCTATCGAGTACCATTGCTGGAATTCTATTGTTGCTCGTGTCGTTCTCGTGCTTGTTGATTGTGAAATGGAAACGTAATGATAAGCAGTTACTGAAATCCCAATTGTGGGATATGAAGCCATTCCACATAGTGTGCTTCACGGAAAAGGAAATCATCGATTCAATCAATTCTGGCAACTTGATAGGCAAAGGAGGATCTGGGAATGTGTACAAAGTTGTACTAAATAATGGCAAAGAACTTGCAGTGAAACATCTATGGCAGTCGGGCTCCAGGGACCAAACAAATTGTCGAACTAGCGCGACTATGTTAACCAAAAGAAAGACCAGGTCATCTGAATATGATGCAGAAGTGGCTACATTGAGTTCAGTGAGGCATGTCAATGTAGTGAAACTATACTGTAGCATTTCGAGCGAGGATAGTAATCTGTTGGTTTACGAGTACTTACCGAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTTGCGGTTGGGGCAGCAAGGGGACTGGAGTATTTGCATCATGGGTGTGACCGACCCGTGATTCACCGAGATGTGAAGTCGAGTAATATTTTGTTGGACAGTGATTGGAAGCCTAGGATTGCAGATTTCGGGCTAGCTAAGATCCTGCAGGATGACTGTGGGAGTGGAGATTCGTCTCATGTCATTGCTGGAACACTCGGTTATCTAGCCCCTGAATACGCATACACATGCAAGATAAATGAGAAGAGCGACGTCTACAGCTTCGGAGTAGTCTTAATGGAACTAGTAACAGGAAAGAAGCCAAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAGTGGGCACACAGCAGAATGAGAGACCTGAAAGGCAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAGGTGGAAGATGCAGTCAAAGTGTTGAGAATCGCACTTCGCTGCACGGCCAAGATTCCATCTACAAGGCCCTCCATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAACCCTATAACCTCATTGACATTGTTGTCAAGAAAGAATGTGAAAAGTAA 2982 44.77 MTNSPNPPPLPTPRRRPPPVALRHHLLLLLLLLLLCSLPISHGDELQPLLDLKAALHQNSTSSSSSLVFSSWISGKDVCSSFHGIVCDSNGSVLEINLYAQNLSGVLPFDSICSLKSLERLSFGLNSLYGKVTDGFRNCSRLKYLDLSQNSFSGEVPDLSSLGGLRFLSLNQSGFSGDFPWKSLLNLTDLEFLSLGDNSFNPTSSFPSEILELKKLHWLYLSNCSIHGEIPPGIGNLSLLENLELSQNELTGDIPSEIVNLQKLWQLELHENSLTGKLPVGFRNLTGLRKFDASSNNLEGDLMELRFLTNVESLQLFENRFSGTIPEEFGDFKELVGLSLYQNKLTGSLPQKIGSWAAFEFIDVSENFLTGPIPPDMCKQGSMTRLLMLQNNFIGGIPESYTNCKSLNRFRVNNNSLSGVVPSGIWSLPNLSIIDLSMNQFEGPVTSDIGKAKALAQLLLSNNRFSGNLPAELGEVSSLVSIQLESNQFVGPIPESLGKLKDLSSISLNDNKFSDNIPSSLGSCISLSTINLAMNSFSGHIPENLGYLPILNSLNLSNNELSGEIPISFSQLKLSSFDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSESLRYLSSCSSTSRSSSHLKTLLSSTIAGILLLLVSFSCLLIVKWKRNDKQLLKSQLWDMKPFHIVCFTEKEIIDSINSGNLIGKGGSGNVYKVVLNNGKELAVKHLWQSGSRDQTNCRTSATMLTKRKTRSSEYDAEVATLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDDCGSGDSSHVIAGTLGYLAPEYAYTCKINEKSDVYSFGVVLMELVTGKKPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNLIDIVVKKECEK 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1414456 1417544 + Lag0014500.1 Lac12g0128 588725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0128 993 Gene3D Transferase(Phosphotransferase) domain 1 779 987 - -
Lac12g0128 993 PANTHER OS04G0122200 PROTEIN 383 974 IPR051809 -
Lac12g0128 993 SMART serkin_6 686 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0128 993 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 495 616 - -
Lac12g0128 993 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 779 990 - -
Lac12g0128 993 FunFam Receptor-like protein kinase HAIKU2 669 778 - -
Lac12g0128 993 SUPERFAMILY L domain-like 204 446 - -
Lac12g0128 993 FunFam Receptor-like protein kinase 7 132 383 - -
Lac12g0128 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0128 993 Gene3D Ribonuclease Inhibitor 494 619 IPR032675 -
Lac12g0128 993 SUPERFAMILY Protein kinase-like (PK-like) 667 975 IPR011009 -
Lac12g0128 993 SUPERFAMILY L domain-like 385 594 - -
Lac12g0128 993 Pfam Protein kinase domain 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0128 993 Gene3D Phosphorylase Kinase; domain 1 673 778 - -
Lac12g0128 993 Pfam Leucine rich repeat N-terminal domain 43 88 IPR013210 -
Lac12g0128 993 FunFam Inactive leucine-rich repeat receptor-like protein kinase 399 494 - -
Lac12g0128 993 Gene3D Ribonuclease Inhibitor 306 378 IPR032675 -
Lac12g0128 993 ProSiteProfiles Protein kinase domain profile. 686 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0128 993 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524(InterPro)
Lac12g0128 993 SUPERFAMILY L domain-like 53 216 - -
Lac12g0128 993 Gene3D Ribonuclease Inhibitor 203 305 IPR032675 -
Lac12g0128 993 Gene3D Ribonuclease Inhibitor 379 493 IPR032675 -
Lac12g0128 993 ProSiteProfiles Leucine-rich repeat profile. 141 163 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 573 592 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 141 158 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 310 331 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 551 572 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Lac12g0128 993 Gene3D Ribonuclease Inhibitor 44 202 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0128 Lac-Chr12:1414456 Lac2g0817 Lac-Chr2:6478746 9.00E-86 dispersed
Lac7g1477 Lac-Chr7:15596569 Lac12g0128 Lac-Chr12:1414456 1.00E-43 dispersed
Lac12g0128 Lac-Chr12:1414456 Lac2g0816 Lac-Chr2:6461500 2.50E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85781 PF00069 Pkinase 9.60E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0128 - - - 0.0