Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0135 ATGGCATATGCCAACTTTCTCTCCCCACTTTGCCTCATAGGACTAGCCCTAACATTAGCTTCCATCTCTCCCGTGGTCGCCACGAAAAGCACCCCGAAGGACTTTGTCGATGCGCACAATGCCGTCCGTGCCGACTATGGCGTTGGCCCGGTCACTTGGAACACTACTCTAGAAGCCTATGCTAAAAATTATGCCAAGACTAGGATTGCTACATGCGAGATGGAACACTCCAATGGACCTTATGGTGAAAACTTAGCCGAGGCATTCGAGACGACAACGGCAGAATTGACCGTGAACTTTTGGGCTAGCGAGAAGAAGTTCTACGATCACAAGTCGAACAAGTGCGTCGATGACGAGTGTGGCCATTTTAGACAGGTTGTGTGGAAGGACACAACATCTATAGGTTGTGCTGAAGTTAAGTGCCAAAACAACTATATTTTCACCATTTGCAACTATTATCCTCCAGGAAACTATCCTGACCAACTTCCTTACTAA 495 47.27 MAYANFLSPLCLIGLALTLASISPVVATKSTPKDFVDAHNAVRADYGVGPVTWNTTLEAYAKNYAKTRIATCEMEHSNGPYGENLAEAFETTTAELTVNFWASEKKFYDHKSNKCVDDECGHFRQVVWKDTTSIGCAEVKCQNNYIFTICNYYPPGNYPDQLPY 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1511571 1512065 + Lag0014507.1 Lac12g0135 588732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0135 164 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Lac12g0135 164 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Lac12g0135 164 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Lac12g0135 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
Lac12g0135 164 FunFam CAP, cysteine-rich secretory protein, antigen 5 29 164 - -
Lac12g0135 164 CDD CAP_PR-1 32 164 - -
Lac12g0135 164 SUPERFAMILY PR-1-like 28 164 IPR035940 -
Lac12g0135 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 33 159 IPR001283 GO:0005615(PANTHER)
Lac12g0135 164 Gene3D CAP 25 164 IPR035940 -
Lac12g0135 164 SMART SCP_3 30 160 IPR014044 -
Lac12g0135 164 Pfam Cysteine-rich secretory protein family 36 152 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0135 K13449 - - csv:101210746 266.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0135 Lac-Chr12:1511571 Lac12g0139 Lac-Chr12:1548050 2.20E-58 dispersed
Lac12g0134 Lac-Chr12:1510068 Lac12g0135 Lac-Chr12:1511571 3.80E-55 tandem
Lac12g0135 Lac-Chr12:1511571 Lac12g0136 Lac-Chr12:1515002 5.10E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004442 0 2 0 0 0 2 0 2 2 1 1 2 4 1 2 3 2 0 2 2 1 0 0 1 1 1 8 1 2 0 43