Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0153 ATGCGAGGACAATATTCTCACCCACCGAAGCCGGGTTTCGCCGGACCCGATGAGGAAAACGAACCAGTTCGCTCTTCTCTTCCCGGACTGAACGTCCCGTTAGGCGCCGCCGGAATTCGGAAGAAGGGGACCGGAGTCCGGCCATGGCTGCTACTCGACTCTACCGGCGGGGCTCAGGTGGTTGAGGCCGGAAAACATGCGATTATGCGGCGGACCGGTCTGCCGGCGCGGGACCTCCGGATCCTCGATCCGATGCTCTCATATCCGTCTACGATTCTTGGCCGTGAGAAAGCGATTGTTATCAATTTGGAGCACATCAAAGCCATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCCGTAATCCCCTTTGTAGAGGAGCTTCAGAGGCGAGTGCTGCGGCACCATCAAGCCACTAAGGCCGCTCAGGAGGGCAATGGGGACGATTCTAATTGGAGAAATCTGTATGACTTGGAGGAGCCACGATCGAGGGCTCAAAGTCCTCGTAATTCCTATCAAGGATTTCCTCAGGCTGAAGAGGAGGAGGGGAAGGACAACGGGAAACAAGGTCTTGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGTGAAGCAGATACATTGGAGCAAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATAAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGATGAGTTAGAACACTTGCTAGATGATGACGACGATATGGCTGAGATGTACTTAACAGAGAAGGTTCAGCAACAGCTTGAGAACTCTTCCACTTCTTCAATTCCTGAGAGAGATGAAACGGACGATGAAGTTCAGCAATTAGGCAAAGATGACAGTATTCCTGCTGAAATATCATTGGAAGGTGGTGGAACTTCTGCTAATTATGAAGGCAATATGGATGCTTCCCAGGATCACTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCACGGGACTCGGACAAGTACTACCCATAGCGTTATAAGTAAACACCTTGATGTGGAGGAACTCGAGATGCTGTTGGAGGCATATTTTGTTCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACCGAAGATTACATCAATATAATGCTGGATGACAAACAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACGCTCGTCGTGAGCGCTTTCGTCGTGGTGGCAGGTGTCTTCGGGATGAACATCCATATTGAACTTTTCGAACCGGAAAAAGCAGGCATGCCGGAGTTCCTGTGGACCGTTGGTGGTGGCGCTACGGGAACCATCTTCTTGTATGTCATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTTGAGTAG 1488 49.46 MRGQYSHPPKPGFAGPDEENEPVRSSLPGLNVPLGAAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPMLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVIPFVEELQRRVLRHHQATKAAQEGNGDDSNWRNLYDLEEPRSRAQSPRNSYQGFPQAEEEEGKDNGKQGLENREGLKVLPFEFVALEACLEAACSCLESEADTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDDDMAEMYLTEKVQQQLENSSTSSIPERDETDDEVQQLGKDDSIPAEISLEGGGTSANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSVISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGVFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIFLYVIAIAWCKHKRLLE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1701823 1705702 + Lag0014525.1 Lac12g0153 588750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0153 495 Pfam Magnesium transporter MRS2-like 373 418 - -
Lac12g0153 495 Pfam Magnesium transporter MRS2-like 54 134 - -
Lac12g0153 495 Pfam Magnesium transporter MRS2-like 202 295 - -
Lac12g0153 495 CDD Mrs2_Mfm1p-like 49 493 IPR039204 -
Lac12g0153 495 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 493 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac12g0153 495 FunFam Magnesium transporter MRS2-1 37 120 - -
Lac12g0153 495 Gene3D - 37 120 - -
Lac12g0153 495 MobiDBLite consensus disorder prediction 164 195 - -
Lac12g0153 495 Coils Coil 212 232 - -
Lac12g0153 495 MobiDBLite consensus disorder prediction 293 332 - -
Lac12g0153 495 MobiDBLite consensus disorder prediction 1 25 - -
Lac12g0153 495 MobiDBLite consensus disorder prediction 304 319 - -
Lac12g0153 495 Gene3D Magnesium transport protein CorA, transmembrane region 173 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0153 Lac-Chr12:1701823 Lac6g0802 Lac-Chr6:6877473 9.40E-60 dispersed
Lac12g0153 Lac-Chr12:1701823 Lac11g2650 Lac-Chr11:42485541 1.30E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0153 - - - 0.0