Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0175 ATGGAGCAACTCAATGGCCCCATTGGAGATGGAGAATGGAGCTCTCTCAATGGAAACTTCATAGCTGATGAAGAAGAAGAAGCAAATTTCATAGCTCAACTTTTCAACAGTACCACAGCTCCAAATCCTCCTTTCATGGCTGCCCTTGATCTTCATCAATTAGCTTCTTCTTCTTCTTCTTCTTCTTCAAGCTTTTATAATAATTATTGCAGCCAATTATTATTCCCCACTGAAAATGATAGTTATTATTGCAATCCCATGATGAGTTTTTGCTTGGGAGAGCTTGGAATCAATAACAATGGTGGTGGGGGTTTTGATCACCTTGAAGATGAGGACTCCATGAATCTAGAGAGTAATTTGAGGCCTTTTTCTGAAGCTGAGTTGACTAAATTACCTGAAGAAGCTGCCATTGAAGACCAGCTTGAGATCAATTGCAAGAAAAGATCAAGGGGATCTGGTGATGTACAGAAGAGAAGGAATGAGAGGTCAAAGAAAACTCAGAAGCTTACCTCAAGCACCAACACTGAAGAAGATGGCAATAATGCTGGCCATAGCAGGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAACGTCTCTCTCGAGCTAAACGGAGGAGCTAATAACTCGGGATCGAGTCCGAAAGAACCGACCAAATCCCGAGCCAGCCGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACCAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCGGACCCCGAACACACGAAAAGAATCATGA 942 42.78 MEQLNGPIGDGEWSSLNGNFIADEEEEANFIAQLFNSTTAPNPPFMAALDLHQLASSSSSSSSSFYNNYCSQLLFPTENDSYYCNPMMSFCLGELGINNNGGGGFDHLEDEDSMNLESNLRPFSEAELTKLPEEAAIEDQLEINCKKRSRGSGDVQKRRNERSKKTQKLTSSTNTEEDGNNAGHSRQSTSSYCSEDESNVSLELNGGANNSGSSPKEPTKSRASRGSATDPQSLYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTRKES 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1962102 1964739 - Lag0014547.1 Lac12g0175 588772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0175 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 296 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac12g0175 313 MobiDBLite consensus disorder prediction 142 161 - -
Lac12g0175 313 Gene3D - 225 284 IPR036638 GO:0046983(InterPro)
Lac12g0175 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983(InterPro)
Lac12g0175 313 SMART finulus 233 282 IPR011598 GO:0046983(InterPro)
Lac12g0175 313 MobiDBLite consensus disorder prediction 142 239 - -
Lac12g0175 313 MobiDBLite consensus disorder prediction 167 231 - -
Lac12g0175 313 FunFam Basic helix-loop-helix transcription factor 228 285 - -
Lac12g0175 313 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983(InterPro)
Lac12g0175 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 293 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0175 Lac-Chr12:1962102 Lac8g1945 Lac-Chr8:37821383 7.30E-18 dispersed
Lac12g0175 Lac-Chr12:1962102 Lac2g0387 Lac-Chr2:2845294 1.90E-37 wgd
Lac12g0175 Lac-Chr12:1962102 Lac5g2599 Lac-Chr5:44432947 2.90E-46 wgd
Lac12g0175 Lac-Chr12:1962102 Lac6g0252 Lac-Chr6:2037952 4.10E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23007 PF00010 HLH 6.90E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0175 - - - 0.0