Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0185 ATGATGCTGAGGTCGTGTTACCGGCCGCTCGAGCGGTGTTTTGGCCGGTGGGCCGGCGATGGGTTGCTCTGGCACTCGGAATTGAAGCCTCATGCCTCTGGTGATTACTCGATCGCTGTTGTTCAGGCGAATTCGTGTCTTGAGGATCAGAGTCAGGTCTTTACGTCCCCCTCTGCAACTTATGTTGGTGTTTATGATGGCCATGGCGGCCCTGAGGCTTCTCGCTTCGTGAATAAGCATCTTTTTCCTTATATGCACAAGTTTGCTTCAGAACAAGGTGGGCTCTCGGAGGATGTTATTAAGAAGGCATTCAATGCTACAGAAGAGGATTTTTTGCGTTTGGTGAAACGGGCTTTGCCTGCAAAGCCACAGATTGCATCAGTTGGTTCATGCTGTCTTGTAGGTGCAATTTCGAATACAAAGTTATACATTGCGAATCTTGGGGATTCGAGAGCTGTGCTCGGCCGTAGAGTTTCGGAGAGTAAGAGAACACCGGTTGTTGCCGAACGGTTGTCTACCGATCACAATGTCGGAGTAGATGAAGTTAGGAAAGAGGTTGTAGCACTTCATCCTGATGACGCTCATATTGTTGTCTATACCCGTGGAGTTTGGAGAATAAAGGGCATAATTCAGGTTTCAAGATCTATTGGCGATGTCTATTTAAAGAAACCCGAATTCAACCGGGATCCGATATTCCAACAATTTGGAAACCCCGTTCCTTTGAAGCGACCAGTAATGACCGCAGAACCATCGATCCTGACACGAGAGCTTAAACCCCAAGACCTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAACTGACTGATGAGGCTGCTGTGGAGATAGTTTTTAAGAACCCAAGAGCTGGAATTGCAAAGAGATTAGTCAGGGCTGCCCTCCACGAGGCGGCGAGGAAACGCGAGATGAGATACGACGACATAAAGAAGATCGAAAAGGGGATTCGACGTCATTTCCACGACGACATAACTGTCATCGTCGTTTATCTTGACCACAACAGAAGCTCAACTACCACCAGCCGGGCAAAGAACGGCATCACCGGGTACACCAATGCACCTGTTGACATTTTCTCTCTTAACTCAAACTATGAGGCAGAGGACAAACTTCACTCAATGTTCTGA 1143 47.86 MMLRSCYRPLERCFGRWAGDGLLWHSELKPHASGDYSIAVVQANSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYMHKFASEQGGLSEDVIKKAFNATEEDFLRLVKRALPAKPQIASVGSCCLVGAISNTKLYIANLGDSRAVLGRRVSESKRTPVVAERLSTDHNVGVDEVRKEVVALHPDDAHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNPVPLKRPVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLVRAALHEAARKREMRYDDIKKIEKGIRRHFHDDITVIVVYLDHNRSSTTTSRAKNGITGYTNAPVDIFSLNSNYEAEDKLHSMF 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2079906 2082109 + Lag0014557.1 Lac12g0185 588782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0185 380 PANTHER PROTEIN PHOSPHATASE 30 336 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac12g0185 380 Pfam Protein phosphatase 2C 56 306 IPR001932 -
Lac12g0185 380 SUPERFAMILY PP2C-like 42 338 IPR036457 -
Lac12g0185 380 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169(InterPro)
Lac12g0185 380 Gene3D - 25 349 IPR036457 -
Lac12g0185 380 CDD PP2Cc 42 337 IPR001932 -
Lac12g0185 380 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Lac12g0185 380 SMART PP2C_4 25 335 IPR001932 -
Lac12g0185 380 FunFam Probable protein phosphatase 2C 42 26 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0185 Lac-Chr12:2079906 Lac5g0081 Lac-Chr5:679443 7.60E-110 dispersed
Lac12g0185 Lac-Chr12:2079906 Lac9g1843 Lac-Chr9:38204733 1.50E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0185 - - - 0.0