Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0195 ATGGTTTATGGCGCACTTTTGTCTAAATTTTCGCGACTATCGGCAACCGCGAGGCAGGCGGTAGATCGCGAGGAAGCGGCAACGAAAGGATTTGAAATTCATGAAAAAGGCGGCATTTCTCCCTCCTCTTCCTCTCTATTTCACCAACTTCATTCCTTCACTAATGGATTCTCAGATTCTCCTCCCCTTCCTCCGTTTGCCTTCTCCGGCAAACTCTGCCGCCACTTCCTCTCCTTCTCTCCTCCTCTCGGAATCGGAATCGGATTCTTTCCGTCTCCCATGGACGCGCCGGAGTGCCTCAATCCCTCCCTCCGAACCTCGAAGAAGCGAGACGCGGAACAGCTCTCTCCGCAACTCGCCACCGCCAACAAGAGAGCCGTGCTTGGCGAGATCACCAACTCGTTGATCTTCAGTTCCAGCCAGTGCTCGCTTTCTGATCAGGAGATGACGGACAAGGATCTCGACGAGGAGGAACTCCCTCAAGCAACGTCTGTTGATTGTTCGAACGAGTCCGGTTCTTCTTCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAATTGCACATGAAGATACTGCCCAATAATAACATTGAGAAGGCTCACAATGGTGATTCCACTCGTGTACGAGAAATTCTAGTGGATTGGTTAGTAGAGGTCGCCGAGGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATTGACAGATACTTATCTTCGCATGCCGTTGATAGAAGCAGGCTACAGCTTCTTGGCGTTAGTTGCATGCTTATTGCATCAAAGTATGAAGAGATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACATACACCAAGGAACAGGTACTGAATATGGAGAGAGAGGTACGCAAAATCTTGACCTGTGAAGGTGCCCCCACGATAAAAAATTTTCTCAGGCAAGAATGCTTTTCAGCTATCGTGTATTCACAGGCTCCGGACTTGCAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTACATCACCATTGTGTACAATTCTTACCATCAGTAGTCGCTGCATCGGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCATGGTGTTTAGCTCTGCAACGTTACTCCGGTTACAGGCCATCTGAACTGAAGGAATGCATTCTTGCCATTCACGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACAAGCAATTGGAGACAAGTACAAGCAGCATAAGTTCGAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCTGCACATTATTTTGAGGACATTGATAAGCCATCCTTCAACAGGTTCTTAAGAACCTTTACTGTTTGA 1368 46.2 MVYGALLSKFSRLSATARQAVDREEAATKGFEIHEKGGISPSSSSLFHQLHSFTNGFSDSPPLPPFAFSGKLCRHFLSFSPPLGIGIGFFPSPMDAPECLNPSLRTSKKRDAEQLSPQLATANKRAVLGEITNSLIFSSSQCSLSDQEMTDKDLDEEELPQATSVDCSNESGSSSSIYNHLRSLEMELHMKILPNNNIEKAHNGDSTRVREILVDWLVEVAEEYKLVSDTLYLTISHIDRYLSSHAVDRSRLQLLGVSCMLIASKYEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKILTCEGAPTIKNFLRQECFSAIVYSQAPDLQFEFLSCYLAELSLLHHHCVQFLPSVVAASAIFLSRFTIQPEKHPWCLALQRYSGYRPSELKECILAIHDLQLNRKGSSLQAIGDKYKQHKFECVAELSSPSEIPAHYFEDIDKPSFNRFLRTFTV 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2145644 2149430 + Lag0014567.1 Lac12g0195 588792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0195 455 Pfam Cyclin, C-terminal domain 307 429 IPR004367 -
Lac12g0195 455 SMART cyclin_7 311 399 IPR013763 -
Lac12g0195 455 SMART cyclin_7 215 299 IPR013763 -
Lac12g0195 455 Gene3D - 190 305 - -
Lac12g0195 455 Pfam Cyclin, N-terminal domain 177 301 IPR006671 -
Lac12g0195 455 MobiDBLite consensus disorder prediction 147 172 - -
Lac12g0195 455 FunFam Cyclin A1 292 426 - -
Lac12g0195 455 SUPERFAMILY Cyclin-like 307 431 IPR036915 -
Lac12g0195 455 SMART Cyclin_C_2 307 430 IPR004367 -
Lac12g0195 455 SUPERFAMILY Cyclin-like 176 302 IPR036915 -
Lac12g0195 455 PANTHER CYCLINS 152 417 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac12g0195 455 Gene3D - 177 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0195 Lac-Chr12:2145644 Lac8g1821 Lac-Chr8:36495788 2.10E-66 dispersed
Lac12g0195 Lac-Chr12:2145644 Lac2g0367 Lac-Chr2:2751758 1.40E-86 wgd
Lac12g0195 Lac-Chr12:2145644 Lac6g0270 Lac-Chr6:2177378 2.20E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0195 K06627 - csv:101213896 572.392